CuGenDBv2

Gene ID	Carg00170
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S26
Genome location	Carg_Chr04:5720479..5722625
RNA-Seq Expression	Carg00170
Synteny	Carg00170
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0019430 - removal of superoxide radicals (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004784 - superoxide dismutase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000892 - Ribosomal protein S26e IPR038551 - Ribosomal protein S26e superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

GAV62493.1 LOW QUALITY PROTEIN: Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-containing protein/Sod_Fe_C domain-containing protein [Cephalotus follicularis]

6.0e-64

96.88

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPAR
        FIRRRDD PKPGQPGQAPRPAGAG P R
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPAR

XP_004146441.1 40S ribosomal protein S26-1 [Cucumis sativus]

2.0e-64

96.9

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV
        FIRRR+DQ KPGQPGQAPRP GAG PARV
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV

XP_022941874.1 40S ribosomal protein S26-3-like [Cucurbita moschata]

6.0e-64

95.45

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPK---PGQPGQAPRPAGAGIPARV
        F+RRRDDQPK   PGQPGQAPRP GAG PARV
Subjt:  FIRRRDDQPK---PGQPGQAPRPAGAGIPARV

XP_022943123.1 40S ribosomal protein S26-1-like [Cucurbita moschata]

4.4e-67

100

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV
        FIRRRDDQPKPGQPGQAPRPAGAGIPARV
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV

XP_023529394.1 40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo]

5.8e-67

99.22

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV
        FIRRRDDQPKPGQPGQAPRPAGAG+PARV
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM45 40S ribosomal protein S26

9.9e-65

96.9

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV
        FIRRR+DQ KPGQPGQAPRP GAG PARV
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV

A0A1S3C5M1 40S ribosomal protein S26

9.9e-65

96.9

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV
        FIRRR+DQ KPGQPGQAPRP GAG PARV
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV

A0A5A7VIJ0 40S ribosomal protein S26

9.9e-65

96.9

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV
        FIRRR+DQ KPGQPGQAPRP GAG PARV
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV

A0A6J1FWD9 40S ribosomal protein S26

2.1e-67

100

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV
        FIRRRDDQPKPGQPGQAPRPAGAGIPARV
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV

A0A6J1JIN0 40S ribosomal protein S26

2.1e-67

100

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV
        FIRRRDDQPKPGQPGQAPRPAGAGIPARV
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPARV

SwissProt top hits

e value

%identity

Alignment

O45499 40S ribosomal protein S26

1.3e-37

67.5

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRP
        F  +R    +PG PG  PRP
Subjt:  FIRRRDDQPKPGQPGQAPRP

P49206 40S ribosomal protein S26-1

1.1e-55

84.25

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPA
        F RR++D PKPGQPGQAPRPAG G  A
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPA

P49216 40S ribosomal protein S26

8.7e-50

76.56

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQP-GQAPRPAGAGIPA
        F RRR+D+P+  +P G AP P GA  PA
Subjt:  FIRRRDDQPKPGQP-GQAPRPAGAGIPA

Q8LPJ7 40S ribosomal protein S26-2

1.1e-55

84.25

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPA
        F RR++D PKPGQPGQAPRPAG G  A
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPA

Q9LYK9 40S ribosomal protein S26-3

2.4e-55

85.04

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPA
        F RR++D PKP QPGQAPRPAG G PA
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPA

Arabidopsis top hits

e value

%identity

Alignment

AT2G40510.1 Ribosomal protein S26e family protein

7.5e-57

84.25

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPA
        F RR++D PKPGQPGQAPRPAG G  A
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPA

AT2G40590.1 Ribosomal protein S26e family protein

7.5e-57

84.25

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPA
        F RR++D PKPGQPGQAPRPAG G  A
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPA

AT3G56340.1 Ribosomal protein S26e family protein

1.7e-56

85.04

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRRDDQPKPGQPGQAPRPAGAGIPA
        F RR++D PKP QPGQAPRPAG G PA
Subjt:  FIRRRDDQPKPGQPGQAPRPAGAGIPA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTTTCAAGCGCAGGAACGGTGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCTATTAA
GAGGTTTCTAGTGAGGAATATTGTGGAGCAAGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACT
GTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGATGATCAGCCAAAG
CCTGGCCAGCCAGGTCAAGCACCTCGTCCTGCTGGAGCTGGAATTCCTGCTCGTGTATAG

mRNA sequence

Show/hide mRNA sequence

AATCAGCATTTTGCCCACAAAAAAACCCTAATCGGTGCATTTTCTCTCTCGCTGCTTCGTCTGAAAGCTCTGCAGCTTTGAAACAATGACTTTCAAGCGCAGGAACGGTG
GACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCAGGTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCTATTAAGAGGTTTCTAGTGAGGAATATTGTG
GAGCAAGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATACACTCTTCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACA
TGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGTTTCATCAGACGCAGGGATGATCAGCCAAAGCCTGGCCAGCCAGGTCAAGCACCTC
GTCCTGCTGGAGCTGGAATTCCTGCTCGTGTATAGAAGAAACCTTTATATGGCTTCTACGAGCAATACGTAGTAATCTTTACAGTCGCTCTATTATAGTTTGGTCGTTTT
CTTTGGGGATGGAAGTGAATTTTAGAATGAATATGGAAACTTACCCGAGAATTTTGCAGATAGGAGCGTGGGAGGTAAAGAACAGGTTTATTGAGTTAGTTAATGGATTT
TTCTACAGTTTCTTGTTTGGATACTCCAATTTGTTTCTTAAATCATCATTTTACTGTCCGTCTTTCCTGCTTTAATCATATCATATGGTATAGGGAAGGGGCAACGAGAA
AGCAGCATGAAAATTAGATTAAGATTGTTAATTCCATACCCCTTTATGACATTTAATTTCCATCCCAACAGCAGGTGTATGTTTGTGTCTGTGATATCTTTCCTTTAGCC
TTTGAAATATGTAGGTTGCCGTTTCGTGTAGGGGAGAAAATTACCAGGACTATTAAATATCTTGAGTTTATAAAAATGTTGAAAATATTGA

Protein sequence

Show/hide protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPK
PGQPGQAPRPAGAGIPARV

Carg00170 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome