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Carg00186 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00186
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPeptide chain release factor 1 like
Genome locationCarg_Chr04:5807581..5809125
RNA-Seq ExpressionCarg00186
SyntenyCarg00186
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600897.1 hypothetical protein SDJN03_06130, partial [Cucurbita argyrosperma subsp. sororia]4.2e-8099.36Show/hide
Query:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQA VGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

XP_022957582.1 uncharacterized protein LOC111458931 [Cucurbita moschata]5.0e-81100Show/hide
Query:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

XP_022991950.1 uncharacterized protein LOC111488439 [Cucurbita maxima]4.2e-8098.72Show/hide
Query:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSA+HLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEE+NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

XP_023536449.1 uncharacterized protein LOC111797620 [Cucurbita pepo subsp. pepo]9.4e-8098.72Show/hide
Query:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVS SETPIPDTVRVISEPKKKNME+KNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

XP_023552657.1 uncharacterized protein LOC111810237 [Cucurbita pepo subsp. pepo]1.4e-5978.48Show/hide
Query:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG
        MAKSLP A+ LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKNME KNR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG

Query:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        QMFCSGYGVPKDT+KGLAWINRASK QA V + SDRHP YLATDSE S+RRVK+DDIR
Subjt:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

TrEMBL top hitse value%identityAlignment
A0A0A0KM25 Uncharacterized protein1.9e-5475.47Show/hide
Query:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNM---EEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLV
        MAKSLPS    QQFAK+   SK PQS  PK KSRIR SPSETPI  +VRVISEP K      EEKNR PLADVVSDCVKRWFQDTLKEA AGD +MQVLV
Subjt:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNM---EEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLV

Query:  GQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        GQMFCSGYGVPK+TKKGLAWI RASK QA V + SDRHPGYLATDSE S+RRVK+D++R
Subjt:  GQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

A0A6J1FNN7 uncharacterized protein LOC1114471032.0e-5977.85Show/hide
Query:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG
        MAKS P A+ LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKNME KNR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG

Query:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        QMFCSGYGVPKDT+KGLAWINRASK QA V + SDRHP YLATDSE S+RRVK+DDIR
Subjt:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

A0A6J1GZI5 uncharacterized protein LOC1114589312.4e-81100Show/hide
Query:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

A0A6J1JUC7 uncharacterized protein LOC1114884392.0e-8098.72Show/hide
Query:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
        MAKSLPSA+HLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEE+NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM
Subjt:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQM

Query:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
        FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR
Subjt:  FCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR

A0A6J1K2L5 uncharacterized protein LOC1114918261.7e-5879.08Show/hide
Query:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG
        MAKSLP A+ LQQFAK+ V SKKPQS  P+ K +IRVSP ETPI D+VRVISEP   KKNME KNR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVG

Query:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVK
        QMFCSGYGVPKDT+KGLAWI+RASK QA V + SDRHPGYLATDSE S+RRVK
Subjt:  QMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G38450.1 CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597)3.5e-2445.58Show/hide
Query:  MAKSLPSATHLQ-QFAKIAVF--SKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLV
        M KS+P  T L+   A +A F  S KP        S  + S S T   +T R               VPL+ VVSDC KRWF+DTL+EA AG+  MQVL+
Subjt:  MAKSLPSATHLQ-QFAKIAVF--SKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLV

Query:  GQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSE
        GQM+ SGYGVPKD +KG  WI +AS+ ++ V +V D+ PGY A+DS+
Subjt:  GQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSE

AT5G05360.1 unknown protein5.6e-3064.37Show/hide
Query:  NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRR
        NRVPLA VV DCV+RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD  KG AWIN+AS+ ++   +VSD+ PGY A+DS+ ++++
Subjt:  NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRR

AT5G05360.2 unknown protein5.7e-2769.33Show/hide
Query:  NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPG
        NRVPLA VV DCV+RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD  KG AWIN+AS+ ++   +VSD+ PG
Subjt:  NRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWINRASKGQAPVGEVSDRHPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAATCGCTTCCGTCGGCAACTCACCTTCAGCAATTCGCCAAGATCGCTGTCTTCTCGAAGAAGCCTCAATCAGCCGCGCCCAAGCCCAAGTCTAGGATCCGAGT
TTCGCCGTCCGAAACTCCGATTCCCGATACCGTCCGAGTCATCTCGGAGCCAAAGAAGAAGAACATGGAGGAGAAGAATCGGGTTCCGTTGGCTGATGTGGTGTCGGACT
GCGTCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGTGCTGGCGACCCGGCGATGCAGGTCTTGGTAGGGCAGATGTTTTGCTCCGGCTATGGAGTTCCTAAGGAC
ACTAAGAAGGGACTCGCTTGGATCAATCGGGCCTCGAAAGGTCAGGCACCAGTTGGTGAAGTAAGCGACAGACATCCAGGTTACCTTGCAACTGATTCAGAACCAAGCAA
TAGGAGAGTGAAACAAGATGACATCAGATGA
mRNA sequenceShow/hide mRNA sequence
CTCCCTCCTCAACCAAATCTTTTTCTGAATCCAAGAGAGAAGCAAGCCTACGATTTGCAGACGCAAAAAACTGGCGGTTTCCATCCGCGCAAATTCCCTTTGTTTGATGG
CGAAATCGCTTCCGTCGGCAACTCACCTTCAGCAATTCGCCAAGATCGCTGTCTTCTCGAAGAAGCCTCAATCAGCCGCGCCCAAGCCCAAGTCTAGGATCCGAGTTTCG
CCGTCCGAAACTCCGATTCCCGATACCGTCCGAGTCATCTCGGAGCCAAAGAAGAAGAACATGGAGGAGAAGAATCGGGTTCCGTTGGCTGATGTGGTGTCGGACTGCGT
CAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAGTGCTGGCGACCCGGCGATGCAGGTCTTGGTAGGGCAGATGTTTTGCTCCGGCTATGGAGTTCCTAAGGACACTA
AGAAGGGACTCGCTTGGATCAATCGGGCCTCGAAAGGTCAGGCACCAGTTGGTGAAGTAAGCGACAGACATCCAGGTTACCTTGCAACTGATTCAGAACCAAGCAATAGG
AGAGTGAAACAAGATGACATCAGATGATCCTTTCAGTAATCTTAGTAAGTTTTGTTCTGAATTTGAACCTTTCTGTAGTAGAATTCACTCTTCATATGGTTTTATCTTAA
TTATGTGAAATTCAGCAGCATAGATGTGGTAATAAGAAAGATAAGGTAAAACAAGTCATCTTCCATGTTAATGTGTAAAAGTGAAATTTATTTTGTGTTTCTCACCCCTT
TTGTTTTATTTTATGAGATCCCACATCGACTGGGGAGGAAAATGAAATATTCTTTATAAGGGTGTGGAAACC
Protein sequenceShow/hide protein sequence
MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEPKKKNMEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKD
TKKGLAWINRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR