; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg00313 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00313
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA topoisomerase 2-binding protein 1
Genome locationCarg_Chr04:6556694..6558634
RNA-Seq ExpressionCarg00313
SyntenyCarg00313
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608031.1 hypothetical protein SDJN03_01373, partial [Cucurbita argyrosperma subsp. sororia]3.1e-4561.29Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAGVGPECNFSTDEPLPQQDFTCCLAMDGVKI
        MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRSGGKVRGSSREGVQFVR   +    SSA          DE                  
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAGVGPECNFSTDEPLPQQDFTCCLAMDGVKI

Query:  LASVREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTAEIVEWINQKGEGRLLRTTRETTSKSSVVTLHVPDVAAAIENFLEQTR
                                            KTAEIVEWINQKGEGRLLRTTRETTSKSSVVTLHVPDVAAAIENFLEQTR
Subjt:  LASVREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTAEIVEWINQKGEGRLLRTTRETTSKSSVVTLHVPDVAAAIENFLEQTR
KAG7031656.1 hypothetical protein SDJN02_05697 [Cucurbita argyrosperma subsp. argyrosperma]9.7e-100100Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAGVGPECNFSTDEPLPQQDFTCCLAMDGVKI
        MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAGVGPECNFSTDEPLPQQDFTCCLAMDGVKI
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAGVGPECNFSTDEPLPQQDFTCCLAMDGVKI

Query:  LASVREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTAEIVEWINQKGEGRLLRTTRETTSKSSVVTLHVPDVAAAIENFLEQTR
        LASVREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTAEIVEWINQKGEGRLLRTTRETTSKSSVVTLHVPDVAAAIENFLEQTR
Subjt:  LASVREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTAEIVEWINQKGEGRLLRTTRETTSKSSVVTLHVPDVAAAIENFLEQTR
XP_022936987.1 DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata]2.9e-0384.38Show/hide
Query:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
        L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Subjt:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
XP_022936988.1 DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata]1.0e-2446.54Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  E  + +R    +       +GP+C  S    + PLPQQ F
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF

Query:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
        TCCLAMDGVKILAS         + ++    G  +  ++ +  +F++ KN LAAKYK A
Subjt:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
XP_022936988.1 DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata]2.9e-0384.38Show/hide
Query:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
        L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Subjt:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
XP_022936988.1 DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata]1.0e-2447.17Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  E  + +R      S     +GP+C  S    + PLPQQ F
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF

Query:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
        TCCLAMDGVKILAS         + ++    G  +  ++ +  +F++ KN LAAKYK A
Subjt:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
XP_022976695.1 DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita maxima]2.9e-0384.38Show/hide
Query:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
        L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Subjt:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
XP_022976695.1 DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita maxima]1.0e-2446.54Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  E  + +R    +       +GP+C  S    + PLPQQ F
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF

Query:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
        TCCLAMDGVKILAS         + ++    G  +  ++ +  +F++ KN LAAKYK A
Subjt:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
TrEMBL top hitse value%identityAlignment
A0A6J1BWX2 DNA topoisomerase 2-binding protein 17.0e-0378.12Show/hide
Query:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
        L +T+ETTSKSSVVT HVPDVA+AIE+ LEQT
Subjt:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
A0A6J1F9V4 DNA topoisomerase 2-binding protein 1 isoform X11.4e-0384.38Show/hide
Query:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
        L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Subjt:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
A0A6J1F9V4 DNA topoisomerase 2-binding protein 1 isoform X14.2e-2447.17Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF
        ML PK FAG NVF+S NLVA EIF    DALKQNGA+VF+CCDPSR+G      +  +  E  + +R    +       +GP+C  S      PLPQQ F
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF

Query:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
        TCCLAMDGVKILAS         + ++    G  +  K+    +F++VKNVLAAKYK A
Subjt:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
A0A6J1FES7 DNA topoisomerase 2-binding protein 1-A isoform X21.4e-0384.38Show/hide
Query:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
        L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Subjt:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
A0A6J1FES7 DNA topoisomerase 2-binding protein 1-A isoform X25.0e-2546.54Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  E  + +R    +       +GP+C  S    + PLPQQ F
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF

Query:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
        TCCLAMDGVKILAS         + ++    G  +  ++ +  +F++ KN LAAKYK A
Subjt:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
A0A6J1IHL3 DNA topoisomerase 2-binding protein 1-A isoform X21.4e-0384.38Show/hide
Query:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
        L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Subjt:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
A0A6J1IHL3 DNA topoisomerase 2-binding protein 1-A isoform X25.0e-2546.54Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  E  + +R    +       +GP+C  S    + PLPQQ F
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF

Query:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
        TCCLAMDGVKILAS         + ++    G  +  ++ +  +F++ KN LAAKYK A
Subjt:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
A0A6J1IK64 DNA topoisomerase 2-binding protein 1 isoform X15.0e-2547.17Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  E  + +R      S     +GP+C  S    + PLPQQ F
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF

Query:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
        TCCLAMDGVKILAS         + ++    G  +  ++ +  +F++ KN LAAKYK A
Subjt:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
A0A6J1IK64 DNA topoisomerase 2-binding protein 1 isoform X11.4e-0384.38Show/hide
Query:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
        L +TRETTSKSSVVT HVPDVAAAIE+ LEQT
Subjt:  LRTTRETTSKSSVVTLHVPDVAAAIENFLEQT
A0A6J1IK64 DNA topoisomerase 2-binding protein 1 isoform X15.0e-2547.17Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+R+G K    +  +  E  + +R      S     +GP+C  S    + PLPQQ F
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGK----VRGSSREGVQFVRHVSISSSPSSAGVGPECNFS---TDEPLPQQDF

Query:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
        TCCLAMDGVKILAS         + ++    G  +  ++ +  +F++ KN LAAKYK A
Subjt:  TCCLAMDGVKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77320.1 transcription coactivators3.0e-2241.72Show/hide
Query:  FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAG--VGPECNF---STDEPLPQQDFTCCLAMDG
        F G NVF+S NLV  E+F    DA K NGA++F+CCDPSRSG     S    +    H       +     +GP+C         PLPQ+ FTCCLAMDG
Subjt:  FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAG--VGPECNF---STDEPLPQQDFTCCLAMDG

Query:  VKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
        +K+LAS         ++E+    G  +  ++ S   F++VKNVLAAKYK A
Subjt:  VKILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
AT1G77320.2 transcription coactivators1.3e-2241.61Show/hide
Query:  FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAGVGPECNF---STDEPLPQQDFTCCLAMDGVK
        F G NVF+S NLV  E+F    DA K NGA++F+CCDPSRSG            F        +     +GP+C         PLPQ+ FTCCLAMDG+K
Subjt:  FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAGVGPECNF---STDEPLPQQDFTCCLAMDGVK

Query:  ILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA
        +LAS         ++E+    G  +  ++ S   F++VKNVLAAKYK A
Subjt:  ILAS---------VREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTG
TTGCGATCCTTCTCGAAGCGGGGGAAAAGTTCGAGGATCTTCGCGCGAAGGTGTGCAATTTGTTAGGCATGTTTCGATCTCTTCTTCTCCTTCTTCTGCGGGGGTAGGAC
CGGAGTGCAATTTTTCGACTGACGAGCCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTTAAAATTCTGGCATCCGTTAGGGAAGTTAGTTACTGC
AATGGGAGGAGTATTGCATACAAAAGCATCTCTAGATTCACCTTCATCGTTGTGAAGAATGTCTTGGCTGCAAAATACAAGACAGCTGAAATTGTTGAATGGATAAATCA
AAAGGGGGAGGGGAGATTGTTGAGGACCACAAGAGAAACGACATCAAAATCTTCTGTAGTAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTTTTGGAGC
AGACAAGGTAA
mRNA sequenceShow/hide mRNA sequence
TGACGAAGCAACGGCCGAGATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATG
GGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAGCGGGGGAAAAGTTCGAGGATCTTCGCGCGAAGGTGTGCAATTTGTTAGGCATGTTTCGATCTCTTCTTCTCCT
TCTTCTGCGGGGGTAGGACCGGAGTGCAATTTTTCGACTGACGAGCCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTTAAAATTCTGGCATCCGT
TAGGGAAGTTAGTTACTGCAATGGGAGGAGTATTGCATACAAAAGCATCTCTAGATTCACCTTCATCGTTGTGAAGAATGTCTTGGCTGCAAAATACAAGACAGCTGAAA
TTGTTGAATGGATAAATCAAAAGGGGGAGGGGAGATTGTTGAGGACCACAAGAGAAACGACATCAAAATCTTCTGTAGTAACTTTACATGTTCCTGATGTTGCTGCTGCA
ATTGAGAACTTTTTGGAGCAGACAAGGTAA
Protein sequenceShow/hide protein sequence
MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRSGGKVRGSSREGVQFVRHVSISSSPSSAGVGPECNFSTDEPLPQQDFTCCLAMDGVKILASVREVSYC
NGRSIAYKSISRFTFIVVKNVLAAKYKTAEIVEWINQKGEGRLLRTTRETTSKSSVVTLHVPDVAAAIENFLEQTR