; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg00314 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00314
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X2
Genome locationCarg_Chr04:6558638..6559685
RNA-Seq ExpressionCarg00314
SyntenyCarg00314
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608031.1 hypothetical protein SDJN03_01373, partial [Cucurbita argyrosperma subsp. sororia]8.5e-2495.08Show/hide
Query:  LHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT
        L   RAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT
Subjt:  LHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT
KAG7031657.1 hypothetical protein SDJN02_05698, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-54100Show/hide
Query:  MDRALIPLLHFNILFSRILLFHFLFKIHDRKSPGKTCFDKVNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRV
        MDRALIPLLHFNILFSRILLFHFLFKIHDRKSPGKTCFDKVNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRV
Subjt:  MDRALIPLLHFNILFSRILLFHFLFKIHDRKSPGKTCFDKVNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRV

Query:  RTWSSMT
        RTWSSMT
Subjt:  RTWSSMT
XP_038898754.1 DNA topoisomerase 2-binding protein 1 isoform X1 [Benincasa hispida]2.0e-1757.43Show/hide
Query:  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM
        KIHD+KSPGKT  DK                   +         RAERKEDV     GDGS GIY GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Subjt:  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM

Query:  T
        T
Subjt:  T
XP_038898756.1 DNA topoisomerase 2-binding protein 1 isoform X2 [Benincasa hispida]2.0e-1757.43Show/hide
Query:  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM
        KIHD+KSPGKT  DK                   +         RAERKEDV     GDGS GIY GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Subjt:  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM

Query:  T
        T
Subjt:  T
XP_038898757.1 DNA topoisomerase 2-binding protein 1 isoform X3 [Benincasa hispida]2.0e-1757.43Show/hide
Query:  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM
        KIHD+KSPGKT  DK                   +         RAERKEDV     GDGS GIY GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Subjt:  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM

Query:  T
        T
Subjt:  T
TrEMBL top hitse value%identityAlignment
A0A1S4DV59 DNA topoisomerase 2-binding protein 1 isoform X21.6e-1554.46Show/hide
Query:  KIHDRKSPGKTCFDKV-------------NETFILHDL------RAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM
        KI D+KSPGKT  DK              +ET  +  +      RAERKEDV      DG+ GIY GF ETQTESQVVGYEEDLSG Q+L+D+VRT SSM
Subjt:  KIHDRKSPGKTCFDKV-------------NETFILHDL------RAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM

Query:  T
        T
Subjt:  T
A0A6J1F9V4 DNA topoisomerase 2-binding protein 1 isoform X14.1e-1656Show/hide
Query:  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM
        KIHD+KSPGKT  DK                   V  +      RAERKEDV     GDG  G Y GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Subjt:  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM
A0A6J1FES7 DNA topoisomerase 2-binding protein 1-A isoform X24.1e-1656Show/hide
Query:  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM
        KIHD+KSPGKT  DK                   V  +      RAERKEDV     GDG  G Y GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Subjt:  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM
A0A6J1IHL3 DNA topoisomerase 2-binding protein 1-A isoform X22.4e-1655.34Show/hide
Query:  KIHDRKSPGKTCFDKVNETFILHDL----------------------RAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTW
        KIHD+KSPGKT  DK   +  L D                       RAERKEDV     GDG  G Y GF ETQTESQVVGYEEDLSG Q+LIDRVRT 
Subjt:  KIHDRKSPGKTCFDKVNETFILHDL----------------------RAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTW

Query:  SSM
        SSM
Subjt:  SSM
A0A6J1IK64 DNA topoisomerase 2-binding protein 1 isoform X12.4e-1655.34Show/hide
Query:  KIHDRKSPGKTCFDKVNETFILHDL----------------------RAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTW
        KIHD+KSPGKT  DK   +  L D                       RAERKEDV     GDG  G Y GF ETQTESQVVGYEEDLSG Q+LIDRVRT 
Subjt:  KIHDRKSPGKTCFDKVNETFILHDL----------------------RAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTW

Query:  SSM
        SSM
Subjt:  SSM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77320.1 transcription coactivators1.1e-1348.42Show/hide
Query:  KIHDRKSPG----KTCFDKVNE---------TFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT
        KI D+KSPG    KT F    +             H +    K D      GD +   YG F ETQTESQVVGYEEDLSG Q+LIDRVRT SS+T
Subjt:  KIHDRKSPG----KTCFDKVNE---------TFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT
AT1G77320.2 transcription coactivators1.1e-1348.42Show/hide
Query:  KIHDRKSPG----KTCFDKVNE---------TFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT
        KI D+KSPG    KT F    +             H +    K D      GD +   YG F ETQTESQVVGYEEDLSG Q+LIDRVRT SS+T
Subjt:  KIHDRKSPG----KTCFDKVNE---------TFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGAGCTTTAATTCCATTACTTCATTTCAATATATTGTTCTCTCGGATCCTTCTGTTCCACTTTCTTTTTAAGATTCATGATCGGAAGTCACCTGGAAAGACTTG
CTTCGACAAAGTTAATGAGACTTTTATTTTGCATGATCTCAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGGAGATGGGAGCGGAGGCATATATGGTGGTT
TTTGTGAAACACAAACCGAGTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCGGGAATGCAAATACTTATAGACAGAGTTCGAACCTGGAGTAGCATGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGAGCTTTAATTCCATTACTTCATTTCAATATATTGTTCTCTCGGATCCTTCTGTTCCACTTTCTTTTTAAGATTCATGATCGGAAGTCACCTGGAAAGACTTG
CTTCGACAAAGTTAATGAGACTTTTATTTTGCATGATCTCAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGGAGATGGGAGCGGAGGCATATATGGTGGTT
TTTGTGAAACACAAACCGAGTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCGGGAATGCAAATACTTATAGACAGAGTTCGAACCTGGAGTAGCATGACTTAA
Protein sequenceShow/hide protein sequence
MDRALIPLLHFNILFSRILLFHFLFKIHDRKSPGKTCFDKVNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT