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Carg00333 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00333
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNase H domain-containing protein
Genome locationCarg_Chr04:6650385..6651781
RNA-Seq ExpressionCarg00333
SyntenyCarg00333
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAE5964481.1 unnamed protein product [Arabidopsis arenosa]5.7e-0873.91Show/hide
Query:  LIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL
        L  IM+SSIVPVVPK T GARDF F+PTGIA+ AP TENT VP+AL
Subjt:  LIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL

KAE8077422.1 hypothetical protein FH972_015987 [Carpinus fangiana]4.6e-1078.72Show/hide
Query:  ALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL
        A+IP++ISS+VPVVPKNTRGARDF FIPTGIAS APATE T VP  L
Subjt:  ALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL

KAG6608047.1 Protein ROLLING AND ERECT LEAF 2, partial [Cucurbita argyrosperma subsp. sororia]2.7e-1089.74Show/hide
Query:  QYMAYYFMFSHRQRAIGGSGDALRHTTYRHLQILAEMFL
        QYMAYYFMFSHRQRAIGGSGDALRHTTYRHLQIL  + L
Subjt:  QYMAYYFMFSHRQRAIGGSGDALRHTTYRHLQILAEMFL

KAG7031676.1 hypothetical protein SDJN02_05717, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-81100Show/hide
Query:  MQYMAYYFMFSHRQRAIGGSGDALRHTTYRHLQILAEMFLGFERRLKKSAKGRAGQVTKVIQTCKHNLKNGIGIQQQRVRVQSFGLLLIASFDAQHALIP
        MQYMAYYFMFSHRQRAIGGSGDALRHTTYRHLQILAEMFLGFERRLKKSAKGRAGQVTKVIQTCKHNLKNGIGIQQQRVRVQSFGLLLIASFDAQHALIP
Subjt:  MQYMAYYFMFSHRQRAIGGSGDALRHTTYRHLQILAEMFLGFERRLKKSAKGRAGQVTKVIQTCKHNLKNGIGIQQQRVRVQSFGLLLIASFDAQHALIP

Query:  IMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNALCECSMTSKNQPKINA
        IMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNALCECSMTSKNQPKINA
Subjt:  IMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNALCECSMTSKNQPKINA

OMO62607.1 hypothetical protein CCACVL1_22724 [Corchorus capsularis]1.1e-1187.23Show/hide
Query:  ALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL
        ALIPIMISSIVPVVPKNTRGA DF  IPTGIAS APATE T VPNAL
Subjt:  ALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL

TrEMBL top hitse value%identityAlignment
A0A0A9D4B1 Uncharacterized protein4.2e-0968.75Show/hide
Query:  HALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL
        H L+P+M+SS+VPVVPK T GA+DF F+PTGIA+ APATE  QVP AL
Subjt:  HALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL

A0A1R3GX32 Uncharacterized protein5.4e-1287.23Show/hide
Query:  ALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL
        ALIPIMISSIVPVVPKNTRGA DF  IPTGIAS APATE T VPNAL
Subjt:  ALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL

A0A5N6RES6 Uncharacterized protein2.2e-1078.72Show/hide
Query:  ALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL
        A+IP++ISS+VPVVPKNTRGARDF FIPTGIAS APATE T VP  L
Subjt:  ALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL

A0A7C9D2D2 Uncharacterized protein (Fragment)2.1e-0872.34Show/hide
Query:  ALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL
        ALIPIM+SS+VPVVPK T GA DFL +PTGIA+ AP TE T VP AL
Subjt:  ALIPIMISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL

A0A7J6HLW3 RNase H domain-containing protein3.6e-0883.33Show/hide
Query:  MISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL
        MI SIV VVPKNT GA+DFLFIPT IA+NAPATENTQVP AL
Subjt:  MISSIVPVVPKNTRGARDFLFIPTGIASNAPATENTQVPNAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTACATGGCCTACTACTTCATGTTTTCACACCGCCAGCGTGCTATTGGCGGATCGGGAGATGCACTCCGGCATACTACATACCGACACTTACAAATCCTGGCAGA
AATGTTCCTGGGTTTTGAAAGAAGGCTGAAGAAATCAGCCAAGGGCAGGGCAGGGCAGGTTACTAAGGTGATACAAACGTGTAAGCACAATCTCAAGAATGGGATTGGGA
TTCAGCAACAGAGGGTTCGGGTGCAGAGTTTTGGGCTTCTTCTAATAGCTTCATTTGACGCTCAGCATGCACTAATTCCCATTATGATATCAAGCATTGTACCAGTTGTG
CCAAAAAACACAAGGGGTGCCAGAGACTTCCTCTTTATTCCCACTGGAATTGCTAGCAACGCTCCTGCTACTGAGAATACCCAAGTTCCCAACGCACTGTGTGAATGTTC
AATGACAAGTAAGAATCAACCCAAAATCAACGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTACATGGCCTACTACTTCATGTTTTCACACCGCCAGCGTGCTATTGGCGGATCGGGAGATGCACTCCGGCATACTACATACCGACACTTACAAATCCTGGCAGA
AATGTTCCTGGGTTTTGAAAGAAGGCTGAAGAAATCAGCCAAGGGCAGGGCAGGGCAGGTTACTAAGGTGATACAAACGTGTAAGCACAATCTCAAGAATGGGATTGGGA
TTCAGCAACAGAGGGTTCGGGTGCAGAGTTTTGGGCTTCTTCTAATAGCTTCATTTGACGCTCAGCATGCACTAATTCCCATTATGATATCAAGCATTGTACCAGTTGTG
CCAAAAAACACAAGGGGTGCCAGAGACTTCCTCTTTATTCCCACTGGAATTGCTAGCAACGCTCCTGCTACTGAGAATACCCAAGTTCCCAACGCACTGTGTGAATGTTC
AATGACAAGTAAGAATCAACCCAAAATCAACGCTTAA
Protein sequenceShow/hide protein sequence
MQYMAYYFMFSHRQRAIGGSGDALRHTTYRHLQILAEMFLGFERRLKKSAKGRAGQVTKVIQTCKHNLKNGIGIQQQRVRVQSFGLLLIASFDAQHALIPIMISSIVPVV
PKNTRGARDFLFIPTGIASNAPATENTQVPNALCECSMTSKNQPKINA