; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg00349 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00349
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsister chromatid cohesion protein PDS5 homolog A-like
Genome locationCarg_Chr04:6735010..6736732
RNA-Seq ExpressionCarg00349
SyntenyCarg00349
Gene Ontology termsGO:0007064 - mitotic sister chromatid cohesion (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR039776 - Sister chromatid cohesion protein Pds5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608062.1 Sister chromatid cohesion protein PDS5-like A-B, partial [Cucurbita argyrosperma subsp. sororia]5.4e-7883.16Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------
        MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDS KYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA                  
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------

Query:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
                      PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
Subjt:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR

KAG7031692.1 hypothetical protein SDJN02_05733, partial [Cucurbita argyrosperma subsp. argyrosperma]8.6e-84100Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPAPLLFMLQMLVNADVNVAK
        MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPAPLLFMLQMLVNADVNVAK
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPAPLLFMLQMLVNADVNVAK

Query:  DTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
        DTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
Subjt:  DTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR

XP_022980925.1 sister chromatid cohesion protein PDS5 homolog A-like [Cucurbita maxima]4.3e-7581.12Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------
        MAKDSSSLVRRLFIDKAHKLL EQAIPTRYACVFAFCISDSLKDLQDDSLKYM EFIEQYRKIAQIHQNSVGQ GSVTFVPA                  
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------

Query:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
                      PLLFMLQMLVNADV VAKD+VLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
Subjt:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR

XP_023523390.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X1 [Cucurbita pepo subsp. pepo]2.1e-7480.61Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------
        MAKDSSSLVRRLFIDKAHKLL E+AIPTRYACVFAFCISDSLKDLQDDSLKYM EFIEQYRKIAQIHQNSVGQ GS+TFVPA                  
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------

Query:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
                      PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLS APRQILLPLSLYR
Subjt:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR

XP_023523391.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X2 [Cucurbita pepo subsp. pepo]2.1e-7480.61Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------
        MAKDSSSLVRRLFIDKAHKLL E+AIPTRYACVFAFCISDSLKDLQDDSLKYM EFIEQYRKIAQIHQNSVGQ GS+TFVPA                  
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------

Query:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
                      PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLS APRQILLPLSLYR
Subjt:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR

TrEMBL top hitse value%identityAlignment
A0A6J1BR35 sister chromatid cohesion protein PDS5 homolog A-B isoform X41.9e-6570.92Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------
        MAKDSSS+VRRLFIDKAHKLL EQAIPTRYAC FAFCISDS+KDLQDDSLKYM EFIEQY KIAQIHQ SV Q GS+T  PA                  
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------

Query:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
                      PLLF+LQM +NADVN A+DTVLYLHSIFRAI+RVEDAV+I+ SPKLHILADIGLSFVT+LN  GVSLSCAP+QILLPLSLYR
Subjt:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR

A0A6J1BRL6 sister chromatid cohesion protein PDS5 homolog A isoform X21.9e-6570.92Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------
        MAKDSSS+VRRLFIDKAHKLL EQAIPTRYAC FAFCISDS+KDLQDDSLKYM EFIEQY KIAQIHQ SV Q GS+T  PA                  
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------

Query:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
                      PLLF+LQM +NADVN A+DTVLYLHSIFRAI+RVEDAV+I+ SPKLHILADIGLSFVT+LN  GVSLSCAP+QILLPLSLYR
Subjt:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR

A0A6J1BUT7 sister chromatid cohesion protein PDS5 homolog A isoform X11.9e-6570.92Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------
        MAKDSSS+VRRLFIDKAHKLL EQAIPTRYAC FAFCISDS+KDLQDDSLKYM EFIEQY KIAQIHQ SV Q GS+T  PA                  
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------

Query:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
                      PLLF+LQM +NADVN A+DTVLYLHSIFRAI+RVEDAV+I+ SPKLHILADIGLSFVT+LN  GVSLSCAP+QILLPLSLYR
Subjt:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR

A0A6J1FSF4 sister chromatid cohesion protein PDS5 homolog A6.7e-7480.1Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------
        MAKDSSSLVRRLFIDKA KLL EQAIPTRYACVFAF ISDSLKDLQDDSLKYM EFIEQYRKIAQIHQNSVGQGGSVTFVPA                  
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------

Query:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
                      PLLF LQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVD+ETSPKLHILADIGLSFVTA NYSGVSLSCAPRQILLPLSLYR
Subjt:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR

A0A6J1IXY6 sister chromatid cohesion protein PDS5 homolog A-like2.1e-7581.12Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------
        MAKDSSSLVRRLFIDKAHKLL EQAIPTRYACVFAFCISDSLKDLQDDSLKYM EFIEQYRKIAQIHQNSVGQ GSVTFVPA                  
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPA------------------

Query:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
                      PLLFMLQMLVNADV VAKD+VLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR
Subjt:  --------------PLLFMLQMLVNADVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77600.1 ARM repeat superfamily protein3.4e-1454.22Show/hide
Query:  PLLFMLQMLVNADVN--VAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLY
        PL  +LQ+L++ + N    K+T  +L  IFRAIKR EDAVD   +P+LHILADIG S V  LN   V+   APR ILLP SLY
Subjt:  PLLFMLQMLVNADVN--VAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLY

AT1G77600.2 ARM repeat superfamily protein4.9e-2940.1Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVP-------------------
        MAKDS++ + + F+ K +KLLTE  IP+RYAC F+F +S   +DL DDS +Y+  FI +  + ++  ++ + QG S+T  P                   
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVP-------------------

Query:  -------------APLLFMLQMLVNADVN--VAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLY
                      PL  +LQ+L++ + N    K+T  +L  IFRAIKR EDAVD   +P+LHILADIG S V  LN   V+   APR ILLP SLY
Subjt:  -------------APLLFMLQMLVNADVN--VAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLY

AT1G77600.3 ARM repeat superfamily protein4.9e-2940.1Show/hide
Query:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVP-------------------
        MAKDS++ + + F+ K +KLLTE  IP+RYAC F+F +S   +DL DDS +Y+  FI +  + ++  ++ + QG S+T  P                   
Subjt:  MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVP-------------------

Query:  -------------APLLFMLQMLVNADVN--VAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLY
                      PL  +LQ+L++ + N    K+T  +L  IFRAIKR EDAVD   +P+LHILADIG S V  LN   V+   APR ILLP SLY
Subjt:  -------------APLLFMLQMLVNADVN--VAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAGGACTCCTCTTCTTTGGTTAGAAGGCTATTTATTGACAAAGCACACAAGTTACTAACGGAGCAGGCTATACCTACTCGATATGCTTGTGTTTTTGCATTTTG
CATCTCAGATAGCTTGAAGGATCTTCAGGATGATTCACTCAAATATATGGAAGAATTTATTGAGCAATATAGGAAGATAGCTCAGATTCATCAAAATTCTGTGGGTCAAG
GTGGATCAGTGACCTTTGTTCCAGCCCCCCTCCTATTTATGTTGCAGATGTTAGTCAATGCAGATGTAAATGTTGCGAAGGATACCGTTTTGTATTTGCACAGTATTTTT
CGTGCCATTAAGAGGGTTGAGGATGCTGTGGATATTGAAACATCACCTAAGTTACACATTTTAGCGGACATTGGTCTCTCTTTTGTAACTGCTCTAAATTATTCCGGAGT
CTCCCTATCATGTGCCCCAAGGCAGATTTTGCTGCCATTATCACTATATAGA
mRNA sequenceShow/hide mRNA sequence
TATTTCCCCTAAGCCTTATGTTACCTTAGTCGCTAATAAAAATATACTAGGGCATTATTTACTTCTGGAGATTTTATGATACAGTGATAGTGATCAAGCTCGAATCAGAT
TAGCTGCTGCAAAATCAGTTCTTCGTCTTGCCAAAAGATGGGATTCAAAAATTACACCGGAGATTTTCCGTTTTGCAATCTTGATGGCAAAGGACTCCTCTTCTTTGGTT
AGAAGGCTATTTATTGACAAAGCACACAAGTTACTAACGGAGCAGGCTATACCTACTCGATATGCTTGTGTTTTTGCATTTTGCATCTCAGATAGCTTGAAGGATCTTCA
GGATGATTCACTCAAATATATGGAAGAATTTATTGAGCAATATAGGAAGATAGCTCAGATTCATCAAAATTCTGTGGGTCAAGGTGGATCAGTGACCTTTGTTCCAGCCC
CCCTCCTATTTATGTTGCAGATGTTAGTCAATGCAGATGTAAATGTTGCGAAGGATACCGTTTTGTATTTGCACAGTATTTTTCGTGCCATTAAGAGGGTTGAGGATGCT
GTGGATATTGAAACATCACCTAAGTTACACATTTTAGCGGACATTGGTCTCTCTTTTGTAACTGCTCTAAATTATTCCGGAGTCTCCCTATCATGTGCCCCAAGGCAGAT
TTTGCTGCCATTATCACTATATAGA
Protein sequenceShow/hide protein sequence
MAKDSSSLVRRLFIDKAHKLLTEQAIPTRYACVFAFCISDSLKDLQDDSLKYMEEFIEQYRKIAQIHQNSVGQGGSVTFVPAPLLFMLQMLVNADVNVAKDTVLYLHSIF
RAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYR