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Carg00400 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00400
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein 6, chloroplastic-like
Genome locationCarg_Chr04:7032009..7032335
RNA-Seq ExpressionCarg00400
SyntenyCarg00400
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR020526 - Ribosomal protein L6, chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608106.1 50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.9e-43100Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGD
        MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGD
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGD

KAG7031743.1 50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]8.8e-53100Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
        MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS

Query:  EQAPSTSE
        EQAPSTSE
Subjt:  EQAPSTSE

XP_011652886.1 50S ribosomal protein 6, chloroplastic [Cucumis sativus]2.8e-3881.48Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
        MSISTF GC+ISVPPL+N SA + AAPCS G+L IECSSRPNKKATAHHMKTRPRKSQPWDI+RKPTVYPPLP LPPDWT VS VSGD NVE+A SI+SS
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS

Query:  EQAPSTSE
         QAP TSE
Subjt:  EQAPSTSE

XP_022940737.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]1.3e-5198.15Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
        MSISTFFGCRISVPPLV PSARNAAAPCSGGSL IECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS

Query:  EQAPSTSE
        EQAPSTSE
Subjt:  EQAPSTSE

XP_023523426.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]2.6e-5299.07Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
        MSISTFFGCRISVPPLVNPSARNAAAPCSGGSL IECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS

Query:  EQAPSTSE
        EQAPSTSE
Subjt:  EQAPSTSE

TrEMBL top hitse value%identityAlignment
A0A0A0LHS7 Uncharacterized protein1.3e-3881.48Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
        MSISTF GC+ISVPPL+N SA + AAPCS G+L IECSSRPNKKATAHHMKTRPRKSQPWDI+RKPTVYPPLP LPPDWT VS VSGD NVE+A SI+SS
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS

Query:  EQAPSTSE
         QAP TSE
Subjt:  EQAPSTSE

A0A1S3CQF4 50S ribosomal protein 6, chloroplastic5.1e-3879.63Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
        MSISTF GC+ISVPPL+N SA + AAPCSGG+L IECSSRPNKKATAHHMKTRP+KSQPWDI+RKPTVYPPLP LPPDWT VS VSGD NVE+ S+ +SS
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS

Query:  EQAPSTSE
         QAP TSE
Subjt:  EQAPSTSE

A0A5A7TB88 50S ribosomal protein 65.1e-3879.63Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
        MSISTF GC+ISVPPL+N SA + AAPCSGG+L IECSSRPNKKATAHHMKTRP+KSQPWDI+RKPTVYPPLP LPPDWT VS VSGD NVE+ S+ +SS
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS

Query:  EQAPSTSE
         QAP TSE
Subjt:  EQAPSTSE

A0A6J1F7W7 50S ribosomal protein 6, chloroplastic-like3.9e-3880.56Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
        MSIST+FG RISVPPL+N SA +  APCSGG+L IECSSRPNKKATAHHMKTRPRKSQPWDI+RKPTVYPPLP LPPDWT VS +S D  VEVASSIASS
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS

Query:  EQAPSTSE
         QAP T+E
Subjt:  EQAPSTSE

A0A6J1FKF7 50S ribosomal protein 6, chloroplastic-like6.2e-5298.15Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
        MSISTFFGCRISVPPLV PSARNAAAPCSGGSL IECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASS

Query:  EQAPSTSE
        EQAPSTSE
Subjt:  EQAPSTSE

SwissProt top hitse value%identityAlignment
P11892 50S ribosomal protein 6, chloroplastic3.6e-1750.45Show/hide
Query:  SISTFFGCRISVPPLVNPSARNAA----APCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSI
        S+S+ FGC +S+ P  N S RN A       + G L IECSSRP KK+TAHHMKTRPRKS+  D  RKPTVY PLP LPPD+T V P         AS++
Subjt:  SISTFFGCRISVPPLVNPSARNAA----APCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSI

Query:  ASSEQAPSTSE
          +   P+ S+
Subjt:  ASSEQAPSTSE

P82411 50S ribosomal protein 6, chloroplastic1.3e-1945.22Show/hide
Query:  MSISTFFGCR-ISVPPLVNPSA---------RNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGN
        MS+S  FG R +++P ++  S+          +    C GG + IECSSRP KK TAHHMKTRP+K+  WDIKR P VYPPLP LP +WT VS    + +
Subjt:  MSISTFFGCR-ISVPPLVNPSA---------RNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGN

Query:  VEVASSIASSEQAPS
           +++ +S+E A S
Subjt:  VEVASSIASSEQAPS

Q9FKP0 50S ribosomal protein 6, chloroplastic3.3e-1851.52Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGG----SLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVAS
        MS+S  FG  I V    +P  R    P  G      + IECSSRP KK+TAHH KTRP+K+QPWDIKRKPTVY PLP LP +W+  +  S DG    A+
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGG----SLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVAS

Arabidopsis top hitse value%identityAlignment
AT5G17870.1 plastid-specific 50S ribosomal protein 62.3e-1951.52Show/hide
Query:  MSISTFFGCRISVPPLVNPSARNAAAPCSGG----SLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVAS
        MS+S  FG  I V    +P  R    P  G      + IECSSRP KK+TAHH KTRP+K+QPWDIKRKPTVY PLP LP +W+  +  S DG    A+
Subjt:  MSISTFFGCRISVPPLVNPSARNAAAPCSGG----SLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCGACCTTTTTCGGCTGTAGGATTTCGGTTCCGCCATTGGTGAATCCGTCTGCAAGAAATGCTGCTGCTCCATGTTCCGGTGGGAGTTTGGCGATTGAATG
CTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAGTCTCAGCCATGGGACATTAAGCGCAAGCCGACTGTGTATCCTCCTCTGCCGA
ATCTTCCACCGGACTGGACTTTTGTTTCACCAGTCTCTGGCGATGGTAATGTGGAGGTAGCCTCTTCGATTGCTTCATCGGAACAAGCACCGTCTACTAGCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTTCGACCTTTTTCGGCTGTAGGATTTCGGTTCCGCCATTGGTGAATCCGTCTGCAAGAAATGCTGCTGCTCCATGTTCCGGTGGGAGTTTGGCGATTGAATG
CTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAGTCTCAGCCATGGGACATTAAGCGCAAGCCGACTGTGTATCCTCCTCTGCCGA
ATCTTCCACCGGACTGGACTTTTGTTTCACCAGTCTCTGGCGATGGTAATGTGGAGGTAGCCTCTTCGATTGCTTCATCGGAACAAGCACCGTCTACTAGCGAGTAA
Protein sequenceShow/hide protein sequence
MSISTFFGCRISVPPLVNPSARNAAAPCSGGSLAIECSSRPNKKATAHHMKTRPRKSQPWDIKRKPTVYPPLPNLPPDWTFVSPVSGDGNVEVASSIASSEQAPSTSE