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Carg00410 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00410
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHydroxyproline-rich glycoprotein
Genome locationCarg_Chr04:7100891..7101425
RNA-Seq ExpressionCarg00410
SyntenyCarg00410
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031753.1 hypothetical protein SDJN02_05794, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-53100Show/hide
Query:  MEYDYGEAQDPVPLSLPLRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIPDSSGV
        MEYDYGEAQDPVPLSLPLRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIPDSSGV
Subjt:  MEYDYGEAQDPVPLSLPLRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIPDSSGV

Query:  LSLS
        LSLS
Subjt:  LSLS

XP_022940470.1 uncharacterized protein At5g65660-like isoform X1 [Cucurbita moschata]1.4e-4778.91Show/hide
Query:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
        MEYDYGEAQDPVPLSLP                         LRS LGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
Subjt:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC

Query:  PPCAAALVEVEEQKPLRCIPDSSGVLSL
        PPCAAALVEVEEQKPLRCIPDSSG LSL
Subjt:  PPCAAALVEVEEQKPLRCIPDSSGVLSL

XP_022940471.1 uncharacterized protein At5g65660-like isoform X2 [Cucurbita moschata]1.3e-4578.12Show/hide
Query:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
        MEYDYGEAQDPVPLSLP                         LRS LGHRYPPLPPVNTTFSPPDKISPLHT TWKENPAQSLSVLMPGDEVPRFIAMAC
Subjt:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC

Query:  PPCAAALVEVEEQKPLRCIPDSSGVLSL
        PPCAAALVEVEEQKPLRCIPDSSG LSL
Subjt:  PPCAAALVEVEEQKPLRCIPDSSGVLSL

XP_022981074.1 uncharacterized protein At5g65660-like isoform X1 [Cucurbita maxima]3.3e-4171.88Show/hide
Query:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
        MEYDYGEAQDPVPLSLP                         LRS +GHRYPPL PVNT FSPPDKISP+HTK WKE PAQSLSVLMPGDEVPRFIAMAC
Subjt:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC

Query:  PPCAAALVEVEEQKPLRCIPDSSGVLSL
        PPCAAALV VEEQKP R IPDSSG LSL
Subjt:  PPCAAALVEVEEQKPLRCIPDSSGVLSL

XP_023525689.1 uncharacterized protein At5g65660-like isoform X1 [Cucurbita pepo subsp. pepo]4.8e-4076.52Show/hide
Query:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
        MEYDYGEAQDPVPLSLP                         LRS LGHRYPP PPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
Subjt:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC

Query:  PPCAAALVEVEEQKP
        PPCAAALVEVEEQKP
Subjt:  PPCAAALVEVEEQKP

TrEMBL top hitse value%identityAlignment
A0A6J1FIK1 uncharacterized protein At5g65660-like isoform X26.4e-4678.12Show/hide
Query:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
        MEYDYGEAQDPVPLSLP                         LRS LGHRYPPLPPVNTTFSPPDKISPLHT TWKENPAQSLSVLMPGDEVPRFIAMAC
Subjt:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC

Query:  PPCAAALVEVEEQKPLRCIPDSSGVLSL
        PPCAAALVEVEEQKPLRCIPDSSG LSL
Subjt:  PPCAAALVEVEEQKPLRCIPDSSGVLSL

A0A6J1FJP8 uncharacterized protein At5g65660-like isoform X34.3e-3465.62Show/hide
Query:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
        MEYDYGEAQDPVPLSLP                         LRS LGHRYPPLPP                 TWKENPAQSLSVLMPGDEVPRFIAMAC
Subjt:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC

Query:  PPCAAALVEVEEQKPLRCIPDSSGVLSL
        PPCAAALVEVEEQKPLRCIPDSSG LSL
Subjt:  PPCAAALVEVEEQKPLRCIPDSSGVLSL

A0A6J1FQN2 uncharacterized protein At5g65660-like isoform X16.8e-4878.91Show/hide
Query:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
        MEYDYGEAQDPVPLSLP                         LRS LGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
Subjt:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC

Query:  PPCAAALVEVEEQKPLRCIPDSSGVLSL
        PPCAAALVEVEEQKPLRCIPDSSG LSL
Subjt:  PPCAAALVEVEEQKPLRCIPDSSGVLSL

A0A6J1IVG7 uncharacterized protein At5g65660-like isoform X21.5e-3971.09Show/hide
Query:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
        MEYDYGEAQDPVPLSLP                         LRS +GHRYPPL PVNT FSPPDKISP+HT  WKE PAQSLSVLMPGDEVPRFIAMAC
Subjt:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC

Query:  PPCAAALVEVEEQKPLRCIPDSSGVLSL
        PPCAAALV VEEQKP R IPDSSG LSL
Subjt:  PPCAAALVEVEEQKPLRCIPDSSGVLSL

A0A6J1J0Z8 uncharacterized protein At5g65660-like isoform X11.6e-4171.88Show/hide
Query:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC
        MEYDYGEAQDPVPLSLP                         LRS +GHRYPPL PVNT FSPPDKISP+HTK WKE PAQSLSVLMPGDEVPRFIAMAC
Subjt:  MEYDYGEAQDPVPLSLP-------------------------LRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMAC

Query:  PPCAAALVEVEEQKPLRCIPDSSGVLSL
        PPCAAALV VEEQKP R IPDSSG LSL
Subjt:  PPCAAALVEVEEQKPLRCIPDSSGVLSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTATGATTACGGCGAAGCACAGGATCCTGTCCCTCTGAGCCTTCCGCTCCGATCATTTCTCGGCCACCGCTATCCTCCCCTTCCGCCGGTAAACACCACCTTCTC
GCCGCCCGACAAAATTTCCCCGCTCCATACGAAGACATGGAAGGAGAATCCGGCGCAGAGCTTGTCGGTTTTGATGCCCGGCGACGAGGTTCCAAGGTTTATAGCAATGG
CATGTCCGCCGTGTGCGGCGGCGTTGGTGGAGGTTGAAGAACAGAAACCTTTACGGTGTATTCCGGATTCTTCTGGAGTTCTGTCTTTAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTATGATTACGGCGAAGCACAGGATCCTGTCCCTCTGAGCCTTCCGCTCCGATCATTTCTCGGCCACCGCTATCCTCCCCTTCCGCCGGTAAACACCACCTTCTC
GCCGCCCGACAAAATTTCCCCGCTCCATACGAAGACATGGAAGGAGAATCCGGCGCAGAGCTTGTCGGTTTTGATGCCCGGCGACGAGGTTCCAAGGTTTATAGCAATGG
CATGTCCGCCGTGTGCGGCGGCGTTGGTGGAGGTTGAAGAACAGAAACCTTTACGGTGTATTCCGGATTCTTCTGGAGTTCTGTCTTTAAGTTAG
Protein sequenceShow/hide protein sequence
MEYDYGEAQDPVPLSLPLRSFLGHRYPPLPPVNTTFSPPDKISPLHTKTWKENPAQSLSVLMPGDEVPRFIAMACPPCAAALVEVEEQKPLRCIPDSSGVLSLS