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Carg00421 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00421
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTranscription initiation factor IIA subunit 2
Genome locationCarg_Chr04:7177466..7179158
RNA-Seq ExpressionCarg00421
SyntenyCarg00421
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005672 - transcription factor TFIIA complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsIPR003194 - Transcription initiation factor IIA, gamma subunit
IPR009083 - Transcription factor IIA, alpha-helical domain
IPR009088 - Transcription factor IIA, beta-barrel
IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal
IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608125.1 Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5199.06Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ

KAG7031763.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-51100Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ

XP_022936677.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata]4.8e-5198.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++KGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]1.6e-5199.06Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ

XP_038897043.1 transcription initiation factor IIA subunit 2 [Benincasa hispida]5.3e-5096.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDATFKNEDS E+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLL+Q
Subjt:  SKLLTQ

TrEMBL top hitse value%identityAlignment
A0A6J1BWA2 Transcription initiation factor IIA subunit 22.5e-5096.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++KGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLL+Q
Subjt:  SKLLTQ

A0A6J1F935 Transcription initiation factor IIA subunit 22.3e-5198.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++KGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ

A0A6J1FTM1 Transcription initiation factor IIA subunit 27.9e-5299.06Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ

A0A6J1ILT9 Transcription initiation factor IIA subunit 22.3e-5198.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++KGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ

A0A6J1J100 Transcription initiation factor IIA subunit 27.9e-5299.06Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ

SwissProt top hitse value%identityAlignment
A2XZI2 Transcription initiation factor IIA subunit 21.1e-4785.85Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++KGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLL+Q
Subjt:  SKLLTQ

O74948 Transcription initiation factor IIA subunit 28.5e-2753.54Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T KGHL TYRFCD VWTFI+++ +F+ ++   T  +I+IVAC ++
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 21.1e-4785.85Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++KGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLL+Q
Subjt:  SKLLTQ

Q39236 Transcription initiation factor IIA subunit 22.1e-4989.62Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++KGHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ

Q54ND1 Transcription initiation factor IIA subunit 24.7e-2555.45Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQ-ETVGRIKIVACDSK
        +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K T KG LHTYRFCD+VWTFIL++A FK E ++   V R+KIVACD+ 
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQ-ETVGRIKIVACDSK

Query:  L
        +
Subjt:  L

Arabidopsis top hitse value%identityAlignment
AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)1.5e-5089.62Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++KGHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)1.5e-5089.62Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++KGHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACD

Query:  SKLLTQ
        SKLLTQ
Subjt:  SKLLTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAGGT
TCTTGTGCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTGTCAAGGGACATCTGCATACCTATCGATTCTGCGACAACGTTTGGA
CGTTCATTTTGCAGGATGCAACGTTCAAGAACGAGGATTCCCAGGAGACTGTCGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAA
mRNA sequenceShow/hide mRNA sequence
AAATTTCTTCGCTCGCGAAAAGCATTTGGAGCTAACGTTAACCCAGTTAGAATCAAAGAAACCAGAAGCATCACAAACTCACTTTCAATCCATCTTGTTTTTCGAAGAAG
AATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAGG
TTCTTGTGCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTGTCAAGGGACATCTGCATACCTATCGATTCTGCGACAACGTTTGG
ACGTTCATTTTGCAGGATGCAACGTTCAAGAACGAGGATTCCCAGGAGACTGTCGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTGATGA
AGTTTCCATTATTATTTGCTGATGATTGAGGGAAATAGTCACGATGAGAGGAGATGGCCATCAAGGCTGTGCTTCATGTTGCAAGTTTGGAAAAGATTCAAATGTGATTC
TGTAAAGCTACTTTCACGCACATTAACATTACCTTTGATCTTAATTGGCTTCCAAAGCCAGGTTCATGACAATTATACAACCCTTCTAGTTGAATGATAATAAAACACGA
GATATCTGTTTTAACATT
Protein sequenceShow/hide protein sequence
MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ