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Carg00430 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00430
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L39
Genome locationCarg_Chr04:7252796..7254620
RNA-Seq ExpressionCarg00430
SyntenyCarg00430
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006520 - cellular amino acid metabolic process (biological process)
GO:0120029 - proton export across plasma membrane (biological process)
GO:0005840 - ribosome (cellular component)
GO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008553 - proton-exporting ATPase activity, phosphorylative mechanism (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACU14423.1 unknown, partial [Glycine max]9.5e-0970.59Show/hide
Query:  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR
        V+QD QNQEE  EEDEAEQAYP LDP E+RQ++Q+QR+A +LASHQA +LR
Subjt:  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR

KAF5748142.1 hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii]4.3e-0978.72Show/hide
Query:  VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASH
        +PVSQD Q+QEEAREEDEAEQAYP LDP ENRQY Q+Q +AQALAS+
Subjt:  VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASH

KAG7031772.1 hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-21100Show/hide
Query:  MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN
        MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN
Subjt:  MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN

RZC06088.1 60S ribosomal protein L39 [Glycine soja]1.6e-0868.63Show/hide
Query:  PVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVL
        PV+QD QNQEE  EEDEAEQA+P LDP E+RQ++Q+QR+A +LASHQA +L
Subjt:  PVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVL

VVA11576.1 unknown partial [Prunus dulcis]7.3e-0972.55Show/hide
Query:  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR
        V QD  NQEEA EEDEAEQA+P+LDP E+RQ++Q+QR+AQALA HQAR LR
Subjt:  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR

TrEMBL top hitse value%identityAlignment
A0A445K5S6 60S ribosomal protein L397.9e-0968.63Show/hide
Query:  PVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVL
        PV+QD QNQEE  EEDEAEQA+P LDP E+RQ++Q+QR+A +LASHQA +L
Subjt:  PVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVL

A0A5E4E8H2 Uncharacterized protein3.5e-0972.55Show/hide
Query:  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR
        V QD  NQEEA EEDEAEQA+P+LDP E+RQ++Q+QR+AQALA HQAR LR
Subjt:  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR

A0A7J7BX51 Aspartate aminotransferase3.0e-0880.43Show/hide
Query:  VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALAS
        V VSQD Q+QEEAREEDEAEQA P+LDP ENRQ+ QIQR+AQALAS
Subjt:  VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALAS

A0A7J7DP31 Uncharacterized protein2.1e-0978.72Show/hide
Query:  VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASH
        +PVSQD Q+QEEAREEDEAEQAYP LDP ENRQY Q+Q +AQALAS+
Subjt:  VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASH

C6SYV0 Uncharacterized protein (Fragment)4.6e-0970.59Show/hide
Query:  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR
        V+QD QNQEE  EEDEAEQAYP LDP E+RQ++Q+QR+A +LASHQA +LR
Subjt:  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCA
GATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGATTGGATTTGGCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCA
GATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGATTGGATTTGGCAAATTAA
Protein sequenceShow/hide protein sequence
MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN