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Carg00434 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00434
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA ligase
Genome locationCarg_Chr04:7290154..7290525
RNA-Seq ExpressionCarg00434
SyntenyCarg00434
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-64100Show/hide
Query:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
        MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
Subjt:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF

Query:  PIRDFASRLPASPPTSPRLSPAK
        PIRDFASRLPASPPTSPRLSPAK
Subjt:  PIRDFASRLPASPPTSPRLSPAK

XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]2.2e-4477.24Show/hide
Query:  NDYH--PFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
        N+Y+  PFSFT KLKSSILCFR DHGD  ++E ++S R+PRSPLKS A+E  ELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DD+F
Subjt:  NDYH--PFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF

Query:  PIRDFASRLPASPPTSPRLSPAK
        PIRDFASRLPASP +SP   PAK
Subjt:  PIRDFASRLPASPPTSPRLSPAK

XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]7.4e-64100Show/hide
Query:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
        MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
Subjt:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF

Query:  PIRDFASRLPASPPTSPRLSPAK
        PIRDFASRLPASPPTSPRLSPAK
Subjt:  PIRDFASRLPASPPTSPRLSPAK

XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]2.7e-5892.68Show/hide
Query:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
        MLN+YHPFSFTRKLKSSI CFRRDH DF E+E DSSPRTPRSPLKSMAAEFPE+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
Subjt:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF

Query:  PIRDFASRLPASPPTSPRLSPAK
        PIRDFASRLPASPPTS RLSPAK
Subjt:  PIRDFASRLPASPPTSPRLSPAK

XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]5.3e-6298.37Show/hide
Query:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
        MLNDYHPFSFTRKLKSSILCFRRDHGDFLENE DSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
Subjt:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF

Query:  PIRDFASRLPASPPTSPRLSPAK
        PIRDFASRLPASPPTS RLSPAK
Subjt:  PIRDFASRLPASPPTSPRLSPAK

TrEMBL top hitse value%identityAlignment
A0A0A0L4E2 Uncharacterized protein3.5e-3571.55Show/hide
Query:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSP-LKSMAAEFPELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
        M N Y+PFSFT KLKS I CFR DH    + E   +P +P SP LKSM ++ PELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSP-LKSMAAEFPELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPIRDFASRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFASRLPASPP

A0A5A7VBS3 DNA ligase3.5e-3572.41Show/hide
Query:  MLNDYHPFSFTRKLKSSI-LCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
        M N Y+PFSFT KLKSSI  CFR DH   L    D +P      LKSM ++ PELRGMCR+LVARI   SRRRYHHSADFRYDPSSYALNFEDEQVRDD+
Subjt:  MLNDYHPFSFTRKLKSSI-LCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPIRDFASRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFASRLPASPP

A0A6J1CC83 uncharacterized protein LOC1110093861.1e-4477.24Show/hide
Query:  NDYH--PFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
        N+Y+  PFSFT KLKSSILCFR DHGD  ++E ++S R+PRSPLKS A+E  ELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DD+F
Subjt:  NDYH--PFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF

Query:  PIRDFASRLPASPPTSPRLSPAK
        PIRDFASRLPASP +SP   PAK
Subjt:  PIRDFASRLPASPPTSPRLSPAK

A0A6J1FP70 uncharacterized protein LOC1114460223.6e-64100Show/hide
Query:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
        MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
Subjt:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF

Query:  PIRDFASRLPASPPTSPRLSPAK
        PIRDFASRLPASPPTSPRLSPAK
Subjt:  PIRDFASRLPASPPTSPRLSPAK

A0A6J1J1H3 uncharacterized protein LOC1114804171.3e-5892.68Show/hide
Query:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
        MLN+YHPFSFTRKLKSSI CFRRDH DF E+E DSSPRTPRSPLKSMAAEFPE+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
Subjt:  MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF

Query:  PIRDFASRLPASPPTSPRLSPAK
        PIRDFASRLPASPPTS RLSPAK
Subjt:  PIRDFASRLPASPPTSPRLSPAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G48020.1 unknown protein5.4e-0442.86Show/hide
Query:  RNLVARIGRSRRR---YHHSADFRYDPSSYALNFEDEQVRDDDEF---PIRDFASRLPASPPTSPRLSPA
        +  + R  R  RR   +  S  FRYDP SY L+FEDE   DDDE     +R F+ R  AS P +   SPA
Subjt:  RNLVARIGRSRRR---YHHSADFRYDPSSYALNFEDEQVRDDDEF---PIRDFASRLPASPPTSPRLSPA

AT5G11070.1 unknown protein2.3e-1047.47Show/hide
Query:  RTPRSP---LKSMAAEFPELRGMCRNLVARIGRSRR-----------RYHHS----ADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPR
        RTPRSP   LKS A E  ELR  CR + +RI  + R            +HHS     DF YDP SYALNFED  VR DD+    +F +RLP SP T  R
Subjt:  RTPRSP---LKSMAAEFPELRGMCRNLVARIGRSRR-----------RYHHS----ADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPR

AT5G35090.1 unknown protein2.7e-1135.04Show/hide
Query:  SFTRKLKSSIL---CFRRDHGDFLENEGDSSPRTPRSPLKS--------MAAEFPEL-------RGMCRNLVARI--------GRSRRRYHHSADFRYDP
        S  +KLKS      CFR  +    +N  D  P +P +  KS        M  + P L          C++L+ R+        G  +    H+ADF YDP
Subjt:  SFTRKLKSSIL---CFRRDHGDFLENEGDSSPRTPRSPLKS--------MAAEFPEL-------RGMCRNLVARI--------GRSRRRYHHSADFRYDP

Query:  SSYALNFEDEQVRDD-DEFPIRDFASRLPASPPTSPR
        SSYALNF+     D+ D FP+R+F++RLP SPP+S +
Subjt:  SSYALNFEDEQVRDD-DEFPIRDFASRLPASPPTSPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAACGACTACCATCCATTTTCATTTACTCGCAAGCTCAAATCCTCAATCCTCTGTTTCCGTCGCGATCATGGCGATTTCCTCGAAAACGAAGGCGATTCTTCTCC
AAGAACCCCTAGATCGCCGCTGAAATCAATGGCCGCAGAGTTCCCGGAGCTTCGAGGAATGTGCAGGAATCTCGTCGCTCGGATCGGCAGGTCTCGCCGCCGGTACCATC
ACTCCGCCGATTTCCGATACGATCCTTCTAGCTATGCGCTTAATTTCGAGGACGAACAGGTTCGGGATGATGATGAGTTTCCGATTAGGGATTTCGCTTCCAGATTGCCG
GCGTCTCCGCCGACTTCCCCTAGACTTTCGCCCGCGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAACGACTACCATCCATTTTCATTTACTCGCAAGCTCAAATCCTCAATCCTCTGTTTCCGTCGCGATCATGGCGATTTCCTCGAAAACGAAGGCGATTCTTCTCC
AAGAACCCCTAGATCGCCGCTGAAATCAATGGCCGCAGAGTTCCCGGAGCTTCGAGGAATGTGCAGGAATCTCGTCGCTCGGATCGGCAGGTCTCGCCGCCGGTACCATC
ACTCCGCCGATTTCCGATACGATCCTTCTAGCTATGCGCTTAATTTCGAGGACGAACAGGTTCGGGATGATGATGAGTTTCCGATTAGGGATTTCGCTTCCAGATTGCCG
GCGTCTCCGCCGACTTCCCCTAGACTTTCGCCCGCGAAATGA
Protein sequenceShow/hide protein sequence
MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLP
ASPPTSPRLSPAK