CuGenDBv2

Gene ID	Carg00438
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Carg_Chr04:7307705..7310491
RNA-Seq Expression	Carg00438
Synteny	Carg00438
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7031780.1 hypothetical protein SDJN02_05821, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.8e-114

100

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Query:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
        FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
Subjt:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

1.4e-104

91.67

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Query:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKF  SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
        FDPL+RSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LND DAFSG
Subjt:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

5.5e-104

91.67

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Query:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLI+KRKF  +V+K  IVSMNSRFRASAEVPDFLPADW++AHKKNPLGPSLHFTAEEAIQ QLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
        FDPL+RSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILS L VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LND DAFSG
Subjt:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022940177.1 uncharacterized protein LOC111445882 [Cucurbita moschata]

3.8e-113

99.51

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Query:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
        FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLND DAFSG
Subjt:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

2.1e-111

98.04

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Query:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLISKRKF RSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
        F+PLQRSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLND DAFSG
Subjt:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

7.0e-105

91.67

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Query:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKF  SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
        FDPL+RSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LND DAFSG
Subjt:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

3.5e-104

91.18

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Query:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKF  SVNK V VSMNSRFR SAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
        FDPL+RSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LND DAFSG
Subjt:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

2.6e-104

91.67

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Query:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLI+KRKF  +V+K  IVSMNSRFRASAEVPDFLPADW++AHKKNPLGPSLHFTAEEAIQ QLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
        FDPL+RSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILS L VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LND DAFSG
Subjt:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1FIV8 uncharacterized protein LOC111445882

1.8e-113

99.51

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Query:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
        FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLND DAFSG
Subjt:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

1.0e-111

98.04

Show/hide

Query:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLISKRKF RSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG
        F+PLQRSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLND DAFSG
Subjt:  FDPLQRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

2.5e-75

65.66

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Query:  LSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFDPLQR
        L + P+S+S   K       N +  ++ N    +S++VPDFL ADW ++ +K P GP L F+AE+A++ QLDAL+YND P  DYGIEVMY+FAGFDP +R
Subjt:  LSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFDPLQR

Query:  STYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSGGLAY
        STYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+RK+LSSL VEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYWLTES+L+D D FSGG+AY
Subjt:  STYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSGGLAY

Sequences

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CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGTCATGTTGTTCGTCCTTATCGGCGGCTCCTACATCCATGTCCTTGATTTCGAAGCGCAAATTCATGAGATCTGTTAATAAACATGTGATCGTTTCCATGAATTCTCG
CTTCAGAGCTTCTGCAGAAGTTCCTGATTTTCTTCCTGCCGATTGGCATCAAGCACACAAGAAGAATCCTCTAGGTCCAAGTTTACATTTCACTGCAGAGGAAGCTATTC
AACGCCAGCTAGATGCACTGAGATACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCGATCCTCTTCAAAGGTCGACATATTTC
GGTCCCTTCTTCGATTTGGGACAGTTTGAAAGATTCAGACGGGTATTCCACCATTCGGCGTATCGTGTCTTGCTCGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGAT
TGTAGAGGAGAATCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACTATGGTTCAGAGGGTTGGCGGCTCGTGGGATG
GGTATTGGCTTACAGAAAGTGTGCTTAACGATGAAGATGCATTTAGTGGAGGCTTAGCCTACTAAGGAAAAGGATGGCTTCGCTCAAATTGGGTGACTGGTTAGTAAACT
TAGCATAATGTTGTTCAATTTGTATATTTGAAATGTATATCATAGGTCTGTATTATAATTTGAACCTTTGTAAGATCATAGAACTTAGAATTTGTATATATTATTTACAT
GGTTTCGTTCTACTGCTTCTCCCTTTGACGGTCTCTCTCCCTCCGTCGAGTGCATGTGATTAGGATGTTCTTGTGCTAAGTTCGGTTGGTCGAGTTTTTTAAGTTTATAC
CTTTGACAGTCTCTCTCTCCCTTTGTGTGTATGTTCGAGTGCATGTGGTTAGGATGTTCTTGTGTTAAGTTGAGTTTGTCGATTTTTTAACACTCCCTTAAGCAAATATG
ACTGAATACAAAACAAACCGGTAAATTGAAATGTTTATATAAAACTTAATTCTATGTCTAAGGAATTCTGAACTTTAGATTTTCAATTTTATGTTTATTAAGTTTGTCGA
GAATCTATT

Protein sequence

Show/hide protein sequence

MSCCSSLSAAPTSMSLISKRKFMRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFDPLQRSTYF
GPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDEDAFSGGLAY

Carg00438 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome