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Carg00450 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00450
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCoatomer subunit zeta
Genome locationCarg_Chr04:7374650..7378267
RNA-Seq ExpressionCarg00450
SyntenyCarg00450
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0006891 - intra-Golgi vesicle-mediated transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0030126 - COPI vesicle coat (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR022775 - AP complex, mu/sigma subunit
IPR039652 - Coatomer subunit zeta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038809.1 SNARE-like superfamily protein [Cucumis melo var. makuwa]1.5e-7496.6Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+VYTVLGD+AVYVVGKDEYDELALAEVIFVITS IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
        APTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL+RLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

XP_008466411.1 PREDICTED: uncharacterized protein LOC103503824 [Cucumis melo]1.1e-7497.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+VYTVLGDVAVYVVGKDEYDELALAEVIFVITS IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
        APTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL+RLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

XP_022134177.1 uncharacterized protein LOC111006502 [Momordica charantia]7.2e-7496.6Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+VYTVLGDVAVYVVGKDEYDELALAEVIFVITS IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
        APTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL+RLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

XP_022941369.1 uncharacterized protein LOC111446682 [Cucurbita moschata]3.5e-76100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

XP_038896955.1 TSET complex member tstD [Benincasa hispida]2.5e-7496.6Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+VYTVLGDVAVYVVGKDEYDELALAEVIFVITS IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
        +PTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL+RLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

TrEMBL top hitse value%identityAlignment
A0A1S3CRC6 Coatomer subunit zeta5.4e-7597.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+VYTVLGDVAVYVVGKDEYDELALAEVIFVITS IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
        APTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL+RLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

A0A5A7TBS4 Coatomer subunit zeta7.1e-7596.6Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+VYTVLGD+AVYVVGKDEYDELALAEVIFVITS IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
        APTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL+RLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

A0A5D3E691 Coatomer subunit zeta5.4e-7597.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+VYTVLGDVAVYVVGKDEYDELALAEVIFVITS IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
        APTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL+RLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

A0A6J1FN50 Coatomer subunit zeta1.7e-76100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

A0A6J1J445 Coatomer subunit zeta1.7e-76100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

SwissProt top hitse value%identityAlignment
C0HLF1 TSET complex member tstD1.8e-1431.94Show/hide
Query:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDAC-
        M+ ++LI N+ GNI+  +++  +  E++  +   L +   D    +KNE+  V        V+T +GD+ +++ G +E DELAL++V F I   +KD C 
Subjt:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDAC-

Query:  GKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLK
         K  TE+ F+++  K  L LDEI+  G L+  + + I+    LK
Subjt:  GKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLK

Q54CA7 Probable coatomer subunit zeta-B3.7e-0430.22Show/hide
Query:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKD-EYDELALAEVIFVITSLIKDACGK
        A+++ ++ G  L   F+  P      L  +    KL  +  K   N EL +  +K   V+ +   DV ++VVG     +ELAL +V+  + SL K AC  
Subjt:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKD-EYDELALAEVIFVITSLIKDACGK

Query:  AP----TERLFLDKYGKICLCLDEIVWMGILENTEKDRI
              T++ FL+ Y  I L +DEIV  GI+   +++ I
Subjt:  AP----TERLFLDKYGKICLCLDEIVWMGILENTEKDRI

Q5NA06 Coatomer subunit zeta-35.7e-0526.72Show/hide
Query:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTE
        +L+ +S G  +  +++          ++F   + A   K +   E  +    S +VVY  + D+  +V G DE +EL LA V+   +  I          
Subjt:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTE

Query:  RLFLDKYGKICLCLDEIVWMGILENTEKDRI
        R  L+    I LCLDE+V  GI+  T+   I
Subjt:  RLFLDKYGKICLCLDEIVWMGILENTEKDRI

Arabidopsis top hitse value%identityAlignment
AT1G15370.1 SNARE-like superfamily protein3.7e-6880.14Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK
        M+LAVL ANSVGN+L+ERF+GVPAEERLHWRSFLVKLGADNLKG KNEEL VA HKSVY+VYT+LGDV++++VGKDEYDELALAE I++IT+ +KD CGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNE
         PTER+FLDKYG+ICLCLDEIVW G+LENT+KDRIKRL+RLKPP+E
Subjt:  APTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTTGCCGTGCTGATTGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCACGGAGTTCCGGCAGAGGAGCGATTGCATTGGCGATCCTTTCTAGTGAAGCT
GGGAGCTGATAATCTCAAAGGTGCAAAAAATGAAGAGCTCTATGTTGCTTCGCACAAGTCTGTATACGTTGTTTACACAGTCCTCGGTGATGTTGCAGTTTATGTTGTTG
GGAAGGATGAATATGATGAATTAGCTTTGGCAGAAGTGATCTTTGTAATAACATCATTGATAAAGGATGCCTGCGGGAAAGCTCCAACCGAGCGATTGTTTCTTGACAAA
TATGGAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGATGGGTATCTTGGAGAACACAGAGAAAGACAGGATCAAGAGGCTGGTAAGGTTAAAGCCTCCAAATGAGTT
TTGA
mRNA sequenceShow/hide mRNA sequence
ATCAGATTATGCTATATCCGTTGCCAAACAAGCCCTAATTGGTGCCTTAGAATAGAACTTAGAAGAAGAGGAAAAGGAAGAACAAGGAAAAAGAAAAAGTGCGATAGAGA
AAATCTGGGATTGTAAGATTTATTTCGAGAATTCGAACTAGAATATAACTCGGCTCTGAATCAGATTTCTTCCTTGAGAAACTCCGATCGAATCCGAAAGATCAGGCATG
TTGCTTGCCGTGCTGATTGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCACGGAGTTCCGGCAGAGGAGCGATTGCATTGGCGATCCTTTCTAGTGAAGCTGGG
AGCTGATAATCTCAAAGGTGCAAAAAATGAAGAGCTCTATGTTGCTTCGCACAAGTCTGTATACGTTGTTTACACAGTCCTCGGTGATGTTGCAGTTTATGTTGTTGGGA
AGGATGAATATGATGAATTAGCTTTGGCAGAAGTGATCTTTGTAATAACATCATTGATAAAGGATGCCTGCGGGAAAGCTCCAACCGAGCGATTGTTTCTTGACAAATAT
GGAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGATGGGTATCTTGGAGAACACAGAGAAAGACAGGATCAAGAGGCTGGTAAGGTTAAAGCCTCCAAATGAGTTTTG
ATTTAATGAAAGGGTTGCCATCCTCTCAGTCGTCCACTTCGACGTTACTGCTTCCACGTGGTTATCTTCCTGCTTTTCAACTCTTTTACCCGCAAGATCGTTTCAGCTTT
CAGCCCTGTTTTATCATGGTGATCGTCGGTATGTTTACTATACTTCCTATTCTATTTTGTTCGGTTTGTAAGTTAGAACACACGATTCTAAAAGAATTCAAGGGATTGTT
TGGATTAAGATTTTCATAGCGGGTAGGAAGCTTGCGAATACCGACTACATTGGGATTATGAAGTAAATTTGTAGTTGAGATAAAGATT
Protein sequenceShow/hide protein sequence
MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDK
YGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF