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Carg00472 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00472
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHistone deacetylase-like protein
Genome locationCarg_Chr04:7485036..7485932
RNA-Seq ExpressionCarg00472
SyntenyCarg00472
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608173.1 hypothetical protein SDJN03_01515, partial [Cucurbita argyrosperma subsp. sororia]5.2e-6799.25Show/hide
Query:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
        MG GINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
Subjt:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN

Query:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
        SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
Subjt:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ

KAG7031813.1 hypothetical protein SDJN02_05854 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-79100Show/hide
Query:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
        MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
Subjt:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN

Query:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQTSRPRQPSDVWAAALNYNT
        SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQTSRPRQPSDVWAAALNYNT
Subjt:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQTSRPRQPSDVWAAALNYNT

XP_022940392.1 uncharacterized protein LOC111446015 [Cucurbita moschata]4.9e-4999.01Show/hide
Query:  KDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV
        KDDRGTWRIRSRCALGLASLILAIEFGDVSVA+ETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV
Subjt:  KDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV

Query:  Q
        Q
Subjt:  Q

XP_022981718.1 uncharacterized protein LOC111480783 [Cucurbita maxima]8.9e-6797.76Show/hide
Query:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
        MG GINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGD+SVA+ETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
Subjt:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN

Query:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
        SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
Subjt:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ

XP_023524416.1 uncharacterized protein LOC111788320 [Cucurbita pepo subsp. pepo]5.8e-6697.01Show/hide
Query:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
        MG GINCSSSVVLLPRAPDSNSFDSSKVARLSAKDD+GTWRIRSRCALGLASLILAIEFGDVSVA+ETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
Subjt:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN

Query:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
        SLEIIVPENLPRPSQRRKWE IAFTDVENAPAVQ
Subjt:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ

TrEMBL top hitse value%identityAlignment
A0A5A7TBN7 Uncharacterized protein3.9e-3661.84Show/hide
Query:  MGFGINC-SSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVD----SRRVKISRWSDK-RKC
        M   INC SSSV LLP+ P  NSFDS+K A+L  K+D G+WR RS CALGLASLI AIE GDV +A E+ ALES PQ+VD     R  KI RWSD+ RKC
Subjt:  MGFGINC-SSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVD----SRRVKISRWSDK-RKC

Query:  AQWRANSLEIIVPENLPRPSQRRKWETIAFTDVE---NAPAVQTSRPRQPSD
        A WRA SLEIIVPENLPRPSQRRK E IA+  ++   NAP VQ       SD
Subjt:  AQWRANSLEIIVPENLPRPSQRRKWETIAFTDVE---NAPAVQTSRPRQPSD

A0A6J1CAG3 uncharacterized protein LOC111009442 isoform X17.7e-4877.54Show/hide
Query:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALES--PPQVVDSRRVKISRWSDKRKCAQWR
        M   +NCS+SV LLPRAPDSNSFD+SK ARLS K+  G+W  RSRCALGLASLILAIEFG+  VA E QALES  PPQ+VDSRR+KISRWSDKRKCA WR
Subjt:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALES--PPQVVDSRRVKISRWSDKRKCAQWR

Query:  ANSLEIIVPENLPRPSQRRKWETIAFT-DVE-NAPAVQ
        ANSLE IVPENLPRPSQRRKWET+ FT DVE NAPA+Q
Subjt:  ANSLEIIVPENLPRPSQRRKWETIAFT-DVE-NAPAVQ

A0A6J1CAH3 uncharacterized protein LOC111009442 isoform X27.7e-4877.54Show/hide
Query:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALES--PPQVVDSRRVKISRWSDKRKCAQWR
        M   +NCS+SV LLPRAPDSNSFD+SK ARLS K+  G+W  RSRCALGLASLILAIEFG+  VA E QALES  PPQ+VDSRR+KISRWSDKRKCA WR
Subjt:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALES--PPQVVDSRRVKISRWSDKRKCAQWR

Query:  ANSLEIIVPENLPRPSQRRKWETIAFT-DVE-NAPAVQ
        ANSLE IVPENLPRPSQRRKWET+ FT DVE NAPA+Q
Subjt:  ANSLEIIVPENLPRPSQRRKWETIAFT-DVE-NAPAVQ

A0A6J1FJG9 uncharacterized protein LOC1114460152.4e-4999.01Show/hide
Query:  KDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV
        KDDRGTWRIRSRCALGLASLILAIEFGDVSVA+ETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV
Subjt:  KDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV

Query:  Q
        Q
Subjt:  Q

A0A6J1J2V8 uncharacterized protein LOC1114807834.3e-6797.76Show/hide
Query:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
        MG GINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGD+SVA+ETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
Subjt:  MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN

Query:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
        SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
Subjt:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G25625.1 unknown protein9.7e-1136.61Show/hide
Query:  DSNSFDS--------SKVARLSAKDDRGTWRIRSRCALGLASLIL--AIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPE
        DSNS  S        SK++    +++    + +    LG+A+ ++   I+  DV+ ++E   ++SP + + +  V   RWSDKR C  W  NSLE IVPE
Subjt:  DSNSFDS--------SKVARLSAKDDRGTWRIRSRCALGLASLIL--AIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPE

Query:  NLPRPSQRRKWE
        NLPRPS  R+ E
Subjt:  NLPRPSQRRKWE

AT2G25625.2 unknown protein1.5e-1137.84Show/hide
Query:  DSNSFDS-----SKVARLSAKDDRGTWRIRSRCA--LGLASLIL--AIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPEN
        DSNS  S        +++S + +  T   +++C+  LG+A+ ++   I+  DV+ ++E   ++SP + + +  V   RWSDKR C  W  NSLE IVPEN
Subjt:  DSNSFDS-----SKVARLSAKDDRGTWRIRSRCA--LGLASLIL--AIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPEN

Query:  LPRPSQRRKWE
        LPRPS  R+ E
Subjt:  LPRPSQRRKWE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTTGGCATCAATTGTTCATCTTCAGTAGTTCTCCTTCCTCGAGCTCCCGATTCGAATTCCTTTGATTCTTCGAAAGTTGCTCGATTGTCTGCGAAGGACGATAG
AGGAACGTGGAGAATCAGAAGTCGATGCGCTTTAGGTTTAGCGAGCTTGATTCTCGCAATCGAGTTCGGCGACGTCTCCGTCGCCATTGAAACTCAGGCTCTCGAATCGC
CGCCGCAAGTTGTAGATTCGAGGCGTGTAAAGATCTCGAGATGGAGCGACAAAAGAAAATGCGCTCAATGGCGAGCCAATTCGCTCGAGATTATCGTGCCTGAGAACCTT
CCGAGGCCGTCGCAGCGCCGGAAGTGGGAGACAATAGCATTTACGGATGTGGAGAACGCACCGGCAGTTCAAACGTCCAGACCTAGGCAGCCCAGTGATGTTTGGGCCGC
TGCTCTGAACTACAATACCTAA
mRNA sequenceShow/hide mRNA sequence
AGAGAAATGGGTTTTGGCATCAATTGTTCATCTTCAGTAGTTCTCCTTCCTCGAGCTCCCGATTCGAATTCCTTTGATTCTTCGAAAGTTGCTCGATTGTCTGCGAAGGA
CGATAGAGGAACGTGGAGAATCAGAAGTCGATGCGCTTTAGGTTTAGCGAGCTTGATTCTCGCAATCGAGTTCGGCGACGTCTCCGTCGCCATTGAAACTCAGGCTCTCG
AATCGCCGCCGCAAGTTGTAGATTCGAGGCGTGTAAAGATCTCGAGATGGAGCGACAAAAGAAAATGCGCTCAATGGCGAGCCAATTCGCTCGAGATTATCGTGCCTGAG
AACCTTCCGAGGCCGTCGCAGCGCCGGAAGTGGGAGACAATAGCATTTACGGATGTGGAGAACGCACCGGCAGTTCAAACGTCCAGACCTAGGCAGCCCAGTGATGTTTG
GGCCGCTGCTCTGAACTACAATACCTAA
Protein sequenceShow/hide protein sequence
MGFGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAIETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENL
PRPSQRRKWETIAFTDVENAPAVQTSRPRQPSDVWAAALNYNT