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Carg00531 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00531
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontrafficking protein particle complex subunit 11
Genome locationCarg_Chr03:5475504..5476092
RNA-Seq ExpressionCarg00531
SyntenyCarg00531
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603854.1 hypothetical protein SDJN03_04463, partial [Cucurbita argyrosperma subsp. sororia]9.8e-40100Show/hide
Query:  MFPAILPSRFSSAPISITSSTSSSLLSLLCQLQYQLNRQSISFYLQSCDSFQEHQISCCYCLFRFQRLRNAFSELANTYYKDEGRRIKT
        MFPAILPSRFSSAPISITSSTSSSLLSLLCQLQYQLNRQSISFYLQSCDSFQEHQISCCYCLFRFQRLRNAFSELANTYYKDEGRRIKT
Subjt:  MFPAILPSRFSSAPISITSSTSSSLLSLLCQLQYQLNRQSISFYLQSCDSFQEHQISCCYCLFRFQRLRNAFSELANTYYKDEGRRIKT
KAG7034033.1 hypothetical protein SDJN02_03759, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-43100Show/hide
Query:  MFPAILPSRFSSAPISITSSTSSSLLSLLCQLQYQLNRQSISFYLQSCDSFQEHQISCCYCLFRFQRLRNAFSELANTYYKDEGRRIKTGIEKRT
        MFPAILPSRFSSAPISITSSTSSSLLSLLCQLQYQLNRQSISFYLQSCDSFQEHQISCCYCLFRFQRLRNAFSELANTYYKDEGRRIKTGIEKRT
Subjt:  MFPAILPSRFSSAPISITSSTSSSLLSLLCQLQYQLNRQSISFYLQSCDSFQEHQISCCYCLFRFQRLRNAFSELANTYYKDEGRRIKTGIEKRT
TrEMBL top hitse value%identityAlignment
A0A6J1BUC4 trafficking protein particle complex subunit 115.5e-0485.71Show/hide
Query:  RLRNAFSELANTYYKDEGRRIKTGIEKR
        RLRN+FSELANTYYKDEGR++KT IEKR
Subjt:  RLRNAFSELANTYYKDEGRRIKTGIEKR
A0A6J1EF44 trafficking protein particle complex subunit 11 isoform X27.2e-0482.76Show/hide
Query:  RLRNAFSELANTYYKDEGRRIKTGIEKRT
        RLRN+FSELAN YYKDEGR++KT IEKRT
Subjt:  RLRNAFSELANTYYKDEGRRIKTGIEKRT
A0A6J1EFM7 trafficking protein particle complex subunit 11 isoform X17.2e-0482.76Show/hide
Query:  RLRNAFSELANTYYKDEGRRIKTGIEKRT
        RLRN+FSELAN YYKDEGR++KT IEKRT
Subjt:  RLRNAFSELANTYYKDEGRRIKTGIEKRT
A0A6J1KLZ8 trafficking protein particle complex subunit 11 isoform X17.2e-0482.76Show/hide
Query:  RLRNAFSELANTYYKDEGRRIKTGIEKRT
        RLRN+FSELAN YYKDEGR++KT IEKRT
Subjt:  RLRNAFSELANTYYKDEGRRIKTGIEKRT
A0A6J1KSV4 trafficking protein particle complex subunit 11 isoform X27.2e-0482.76Show/hide
Query:  RLRNAFSELANTYYKDEGRRIKTGIEKRT
        RLRN+FSELAN YYKDEGR++KT IEKRT
Subjt:  RLRNAFSELANTYYKDEGRRIKTGIEKRT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65950.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).3.2e-0465.52Show/hide
Query:  RLRNAFSELANTYYKDEGRRIKTGIEKRT
        RL +AF+ELA +YY++EGRRIK+ IEKR+
Subjt:  RLRNAFSELANTYYKDEGRRIKTGIEKRT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCCGGCGATCCTGCCCAGTCGCTTCAGCTCTGCTCCGATCTCGATCACCTCAAGCACTTCCTCATCACTTCTCTCTCTTCTCTGTCAATTGCAGTATCAACTTAA
TCGGCAATCGATTTCATTTTATTTGCAGAGCTGTGACTCGTTCCAGGAACATCAAATTAGTTGTTGTTATTGTCTTTTCCGATTCCAAAGGCTACGGAACGCCTTCTCAG
AACTAGCAAATACATACTATAAAGATGAAGGAAGGAGGATCAAAACAGGTATTGAAAAGAGGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCCGGCGATCCTGCCCAGTCGCTTCAGCTCTGCTCCGATCTCGATCACCTCAAGCACTTCCTCATCACTTCTCTCTCTTCTCTGTCAATTGCAGTATCAACTTAA
TCGGCAATCGATTTCATTTTATTTGCAGAGCTGTGACTCGTTCCAGGAACATCAAATTAGTTGTTGTTATTGTCTTTTCCGATTCCAAAGGCTACGGAACGCCTTCTCAG
AACTAGCAAATACATACTATAAAGATGAAGGAAGGAGGATCAAAACAGGTATTGAAAAGAGGACTTAATTACACT
Protein sequenceShow/hide protein sequence
MFPAILPSRFSSAPISITSSTSSSLLSLLCQLQYQLNRQSISFYLQSCDSFQEHQISCCYCLFRFQRLRNAFSELANTYYKDEGRRIKTGIEKRT