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Carg00615 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00615
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L7/L12
Genome locationCarg_Chr03:5881450..5882499
RNA-Seq ExpressionCarg00615
SyntenyCarg00615
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000206 - Ribosomal protein L7/L12
IPR008932 - Ribosomal protein L7/L12, oligomerisation
IPR036235 - Ribosomal protein L7/L12, oligomerisation domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034116.1 hypothetical protein SDJN02_03843, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-61100Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGFEEVDPYSGAPKLVSSVI
        AVMMPGMGFEEVDPYSGAPKLVSSVI
Subjt:  AVMMPGMGFEEVDPYSGAPKLVSSVI

XP_004149984.1 uncharacterized protein LOC101204400 [Cucumis sativus]5.1e-3677.98Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MRNLRI SP FSRIR+TF Q P SDSPS R++NF G  +FAS SS+NHRNYTTAS ESRPA SERVS IVDEISGL+LL+VADLTEVLR KLDVK+MPVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGF
         +MMPGMGF
Subjt:  AVMMPGMGF

XP_022949973.1 uncharacterized protein LOC111453206 [Cucurbita moschata]2.1e-5098.17Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRN+TTASLESRPAHSERVSGIVDEISGL+LLDVADLTEVLRGKLDVKDMPVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGF
        AVMMPGMGF
Subjt:  AVMMPGMGF

XP_022979088.1 uncharacterized protein LOC111478830 [Cucurbita maxima]9.3e-4692.66Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MRNLRIFS QFSRIRRTF+QYPCSDSPSIRYLNFLGSGSF   +SLNHRNYTTAS ESRPAHSERVSGIVDEISGL+LLDVADLTEVLRGKLDVKDMPVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGF
        AVMMPGMGF
Subjt:  AVMMPGMGF

XP_023543178.1 uncharacterized protein LOC111803128 [Cucurbita pepo subsp. pepo]4.3e-4391.74Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MRNLRIFSPQFSRIRRT    PCSDSPSIRYLNFL SGSFASSSSLN RNYTTAS ESRPAHSERVSGIVDEISGL+LLDVADLTEVL+GKLDVKDMPVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGF
        AVMMPGMGF
Subjt:  AVMMPGMGF

TrEMBL top hitse value%identityAlignment
A0A0A0KMA8 50S ribosomal protein L7/L122.5e-3677.98Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MRNLRI SP FSRIR+TF Q P SDSPS R++NF G  +FAS SS+NHRNYTTAS ESRPA SERVS IVDEISGL+LL+VADLTEVLR KLDVK+MPVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGF
         +MMPGMGF
Subjt:  AVMMPGMGF

A0A5A7SN88 50S ribosomal protein L7/L122.3e-3476.15Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MRNLR FS  FSRIRRTF Q P S SPS R++N  G  +FASSSS+NHRNYTTAS ESRPA SERVS IVDEISGL+LL+VADLTEVLR KLDVK+MPVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGF
         +MMPG GF
Subjt:  AVMMPGMGF

A0A6J1BSG1 uncharacterized protein LOC1110052877.2e-3680.73Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MR LRI SP FSRI RTF Q PC DS S   LN LG GS ASSS LNHRNYTTAS ESRPA SERVS IVDEISGL+LL+VADLTEVLR KLDVKDMPVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGF
        AVMMPGMGF
Subjt:  AVMMPGMGF

A0A6J1GDL5 uncharacterized protein LOC1114532061.0e-5098.17Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRN+TTASLESRPAHSERVSGIVDEISGL+LLDVADLTEVLRGKLDVKDMPVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGF
        AVMMPGMGF
Subjt:  AVMMPGMGF

A0A6J1IV51 uncharacterized protein LOC1114788304.5e-4692.66Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MRNLRIFS QFSRIRRTF+QYPCSDSPSIRYLNFLGSGSF   +SLNHRNYTTAS ESRPAHSERVSGIVDEISGL+LLDVADLTEVLRGKLDVKDMPVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGF
        AVMMPGMGF
Subjt:  AVMMPGMGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like8.5e-0540.38Show/hide
Query:  ESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVMAVMMPGMG
        E R   ++RV  +VDEIS L+LL++++L  ++  K  + ++P +AVM PG G
Subjt:  ESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVMAVMMPGMG

AT1G70190.2 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like8.5e-0540.38Show/hide
Query:  ESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVMAVMMPGMG
        E R   ++RV  +VDEIS L+LL++++L  ++  K  + ++P +AVM PG G
Subjt:  ESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVMAVMMPGMG

AT4G36420.1 Ribosomal protein L12 family protein4.2e-1240Show/hide
Query:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM
        MRNLRI S  FSR+ ++                     +   SSS+      + S  S    SE VS IV+E+S L+LL+  DLTE+LR KL++ ++PVM
Subjt:  MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVM

Query:  AVMMPGMGFEEVDPYSGAPK
        A MMPGM      P SGA K
Subjt:  AVMMPGMGFEEVDPYSGAPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATCTGCGAATTTTTTCTCCTCAGTTCTCGAGGATTCGGAGAACCTTCATTCAATACCCTTGCTCTGATTCTCCGTCCATTCGATATTTAAATTTTCTTGGATC
GGGGAGTTTTGCGTCTTCATCATCGCTGAATCATCGGAATTACACAACTGCTTCACTGGAATCAAGACCAGCCCATTCGGAGAGAGTTTCGGGCATTGTGGATGAGATCT
CCGGTCTCTCGCTACTCGATGTTGCGGACCTCACGGAGGTGCTACGAGGCAAATTGGATGTAAAGGATATGCCGGTAATGGCGGTGATGATGCCTGGGATGGGATTTGAA
GAAGTTGATCCTTACTCCGGAGCTCCTAAACTTGTCTCGAGTGTTATA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATCTGCGAATTTTTTCTCCTCAGTTCTCGAGGATTCGGAGAACCTTCATTCAATACCCTTGCTCTGATTCTCCGTCCATTCGATATTTAAATTTTCTTGGATC
GGGGAGTTTTGCGTCTTCATCATCGCTGAATCATCGGAATTACACAACTGCTTCACTGGAATCAAGACCAGCCCATTCGGAGAGAGTTTCGGGCATTGTGGATGAGATCT
CCGGTCTCTCGCTACTCGATGTTGCGGACCTCACGGAGGTGCTACGAGGCAAATTGGATGTAAAGGATATGCCGGTAATGGCGGTGATGATGCCTGGGATGGGATTTGAA
GAAGTTGATCCTTACTCCGGAGCTCCTAAACTTGTCTCGAGTGTTATA
Protein sequenceShow/hide protein sequence
MRNLRIFSPQFSRIRRTFIQYPCSDSPSIRYLNFLGSGSFASSSSLNHRNYTTASLESRPAHSERVSGIVDEISGLSLLDVADLTEVLRGKLDVKDMPVMAVMMPGMGFE
EVDPYSGAPKLVSSVI