CuGenDBv2

Gene ID	Carg00669
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Translation initiation factor IF-2, putative isoform 1
Genome location	Carg_Chr03:6192996..6195889
RNA-Seq Expression	Carg00669
Synteny	Carg00669
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6604007.1 hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-125

97.56

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKKSVKKSSPSP+REAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPG     VSN
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG
        QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG

KAG7034170.1 hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.3e-130

100

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG
        QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG

XP_022950768.1 uncharacterized protein LOC111453776 [Cucurbita moschata]

2.0e-113

96.49

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKKSVKKSSPSP+REAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLL+TPG     VSN
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSP
        QRLSIGMTPKTRRLPKPGEVLVSIHG P
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSP

XP_022978547.1 uncharacterized protein LOC111478496 [Cucurbita maxima]

2.7e-121

95.51

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFF EKLPSLSISRRGEQ
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAG+RSFNGFEFSSKSVKTNPFNVENLQIPNF LEEPSDNMVLGMPDLLQTPG      SN
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE
        QRLSIGMTPKTRRLPKPGEV+VSIHGSPLGVYRE NMEAIHESEE
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE

XP_023543921.1 uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo]

2.6e-124

97.15

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIEVQWK+TEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPG     VSN
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG
        QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYRE+NMEAIHESEEG
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KRH4 Uncharacterized protein

2.4e-112

86.99

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKK+VKKSSPS  R+AKD + N+LK++      SDEDVERHA AIRAIRDVEIERLIT LRLLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+Q
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIEV+WKDTEDELHTNPADG+DIHASLLHRLSTAYP CSAGMRSFNGFEFSSKSVKTNPFN ENLQIPNF LEEPSD+M LGMPD++QTPGVRIFM+SN
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG
        QRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEEG
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG

A0A1S4DWB9 uncharacterized protein LOC103489436

1.1e-109

86.59

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKK+VKKSSPS  R AKD +A+++K+       SDEDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+Q
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIEVQWKDTEDELHTNPADG+DIHASLLHRLSTAYP CSAGMRSFNGFEFSSKSVKTNPFN ENLQIPNF LEEPSDNMVLGMPD+LQTPG     +SN
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG
        QRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEEG
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEEG

A0A5A7SXV4 Translation initiation factor IF-2, putative isoform 1

4.0e-107

86.31

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKK+VKKSSPS  R AKD +A+++K+       SDEDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+Q
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIEVQWKDTEDELHTNPADG+DIHASLLHRLSTAYP CSAGMRSFNGFEFSSKSVKTNPFN ENLQIPNF LEEPSDNMVLGMPD+LQTPG     +SN
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIH
        QRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIH
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIH

A0A6J1GFT3 uncharacterized protein LOC111453776

9.9e-114

96.49

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKKSVKKSSPSP+REAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLL+TPG     VSN
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSP
        QRLSIGMTPKTRRLPKPGEVLVSIHG P
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSP

A0A6J1ILD3 uncharacterized protein LOC111478496

1.3e-121

95.51

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFF EKLPSLSISRRGEQ
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAG+RSFNGFEFSSKSVKTNPFNVENLQIPNF LEEPSDNMVLGMPDLLQTPG      SN
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE
        QRLSIGMTPKTRRLPKPGEV+VSIHGSPLGVYRE NMEAIHESEE
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G39630.1 unknown protein

3.2e-48

46.5

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Query:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        M +RKAK+ VK      + E        ++ E++     DE+VER   AIRAIRDVEIE+++T LRLLRSYF +EQL TP+L FF+E LP LSISR  E 
Subjt:  MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN
        GEIE++W+D   +      +G+D++ S+L RLS  + +  +   S  G++    +VK N    +N Q+ N   +  S+N +L   D  QTPG     V+ 
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSN

Query:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYRED-NMEAIHE
        QRLS GMTPKT RLPK GE+++S+HGSPLGVY+ED NM AI+E
Subjt:  QRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYRED-NMEAIHE

Sequences

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CDS sequence

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mRNA sequence

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ATGGCAAGGCGAAAGGCGAAGAAGTCAGTTAAGAAGTCCAGCCCTTCACCTGTTCGAGAAGCAAAGGATGGATCAGCGAATGAGCTAAAAAGTGAGGATCAAGCATCATT
GGTGTCCGACGAGGATGTTGAACGGCATGCTACTGCAATCCGTGCCATTCGGGATGTGGAAATCGAGCGTTTGATTACTGAATTGCGGTTGCTGCGTTCGTATTTCAACA
AAGAGCAATTGCAAACTCCTCTATTGCAATTTTTTGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGACGAGGCGAACAAGGAGAAATTGAAGTGCAATGGAAGGATACA
GAGGATGAATTACACACTAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTGCATCGCCTGTCCACAGCTTACCCTAACTGCTCTGCCGGAATGCGATCTTTTAA
TGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATTCCGAACTTCGCTTTGGAGGAACCCTCAGATAACATGGTGCTTGGCA
TGCCAGACCTTCTCCAAACTCCTGGGGTTCGTATCTTCATGGTAAGTAACCAAAGATTGTCTATTGGAATGACGCCAAAAACCCGGAGGCTGCCAAAGCCGGGGGAGGTG
CTTGTATCTATCCATGGATCCCCGCTTGGCGTTTACAGGGAAGACAACATGGAAGCAATCCATGAATCAGAAGAGGGTTGATTTGCTGATTCAAGGCCACTTGACTGCTT
GTCAATTAAAGAAAAAACTTCAAATGCAATCGTCCTGAGCATCGTTCTATCAACCTACTTGCCATGTATCTACCCTTTTGATTACTGCTTATTAAAAGCTTCTCCTTGTG
TATAACTAAGAATTTGAGTGCTTTTACTCGAGGGAACGAGCATGAACAAACGCACAATAGCTCCACTAGATTTTTGTGTATGAATATTTGTTGTGAACCTTGATGTTGAT
ATTGATCAAAGGTGAATCAAAGGCTAAATCAGTTTTTACTCCATTAATTTCCCTCCATTATTCGTTGAGAATCTTGCATCGCAAATTTATCATCACTCTTGACTGGTCTT
TATTTCCAGACATTTTC

Protein sequence

Show/hide protein sequence

MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDT
EDELHTNPADGIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNMVLGMPDLLQTPGVRIFMVSNQRLSIGMTPKTRRLPKPGEV
LVSIHGSPLGVYREDNMEAIHESEEG

Carg00669 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome