; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg00676 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00676
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionE3 ubiquitin-protein ligase RHA2B-like
Genome locationCarg_Chr03:6211525..6212774
RNA-Seq ExpressionCarg00676
SyntenyCarg00676
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036272.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa]8.3e-7489.94Show/hide
Query:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPNADKRVITTAQFLKLIE+KNPTIRFS KVT S  DQCAVCLSEFEEGE VRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD

Query:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRR
        CLDNWLKL FATCPLCR KVLPDDIVAGY RLRDRVEYDGSDEELIFLLSALHG  + R
Subjt:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRR

KAG7034177.1 E3 ubiquitin-protein ligase RHA2B [Cucurbita argyrosperma subsp. argyrosperma]5.7e-91100Show/hide
Query:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD

Query:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRRRTKGSVCRL
        CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRRRTKGSVCRL
Subjt:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRRRTKGSVCRL

XP_022950774.1 E3 ubiquitin-protein ligase RHA2B-like [Cucurbita moschata]1.4e-81100Show/hide
Query:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD

Query:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH

XP_022978570.1 E3 ubiquitin-protein ligase RHA2B-like [Cucurbita maxima]1.8e-8199.35Show/hide
Query:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVF+TLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD

Query:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH

XP_038883588.1 E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]8.3e-7492.21Show/hide
Query:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPNADKRV+TTAQFLKLIEEKNPTIRFS K+TSS  DQCAVCLSEFEEGE VRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD

Query:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKL FATCPLCR KVLPDDIVAGY RLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHG

TrEMBL top hitse value%identityAlignment
A0A0A0KM08 RING-type domain-containing protein1.5e-7388.68Show/hide
Query:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPN+DKRVITTAQF KLIE+KNPTIRFS KVT S  DQCAVCLSEFEEGE VRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD

Query:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRR
        CLDNWLKL FATCPLCR KVLPDDIVAGY RLRDRVEYDGSDEELIFLLSALHG  + R
Subjt:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRR

A0A5A7SYH1 Putative E3 ubiquitin-protein ligase RHA2B4.0e-7489.94Show/hide
Query:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPNADKRVITTAQFLKLIE+KNPTIRFS KVT S  DQCAVCLSEFEEGE VRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD

Query:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRR
        CLDNWLKL FATCPLCR KVLPDDIVAGY RLRDRVEYDGSDEELIFLLSALHG  + R
Subjt:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRR

A0A6J1GGU0 E3 ubiquitin-protein ligase RHA2B-like6.8e-82100Show/hide
Query:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD

Query:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH

A0A6J1HG49 E3 ubiquitin-protein ligase RHA2B-like isoform X16.8e-7488.05Show/hide
Query:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVF TLL+LE V L+RTIFGLRPN DKRVI TAQFLKLIEEKNPTIRFS K+TSS  DQCAVCLSEFEEGE VRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD

Query:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRR
        CLDNWLKL FATCPLCR KVLPDDIVAGY RLRDRVEYDGSDEELIFLLSALHG  + R
Subjt:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRR

A0A6J1IQI4 E3 ubiquitin-protein ligase RHA2B-like8.9e-8299.35Show/hide
Query:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVF+TLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKD

Query:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH

SwissProt top hitse value%identityAlignment
Q8LPN7 E3 ubiquitin-protein ligase RING1-like5.5e-1245.45Show/hide
Query:  PTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDD
        PT++ +K +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDD

Q9SI09 Probable E3 ubiquitin-protein ligase XERICO2.9e-1338.64Show/hide
Query:  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCK--VLPDD
        D RV     +L+    + PT+RF    +    +D++C+VCLS+F+    + KL+C H FHK CL+ W+  +  TCPLCR    V+P+D
Subjt:  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCK--VLPDD

Q9XF92 Brassinosteroid-responsive RING protein 14.6e-1144.74Show/hide
Query:  LIEEKNPTIRFSKKVTSSSD--DQCAVCLSEFEEGEMVRKLQ-CNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDI
        LI E  P I+F +   S  D  + CAVCL EFE  + +R L+ C H FH+ CLD W+     TCPLCR   +PD++
Subjt:  LIEEKNPTIRFSKKVTSSSD--DQCAVCLSEFEEGEMVRKLQ-CNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDI

Q9ZT50 E3 ubiquitin-protein ligase RHA2A1.7e-1356.14Show/hide
Query:  CAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDIVAGYRR
        C VCLS+ +EGE VRKL+C H FHK CL+ WL  F  TCPLCR  ++ DD V+  +R
Subjt:  CAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDIVAGYRR

Q9ZU51 E3 ubiquitin-protein ligase RHA2B8.5e-1337.5Show/hide
Query:  LLLLECVTLIRTIFGLR--PNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRC
        +LL    T  R +  L   P++   V+ T+    L ++ N    FS + + ++   C VCLS+ + GE VRKL C H FHK CL+ WL+     CPLCR 
Subjt:  LLLLECVTLIRTIFGLR--PNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRC

Query:  KVLP
         +LP
Subjt:  KVLP

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A1.2e-1456.14Show/hide
Query:  CAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDIVAGYRR
        C VCLS+ +EGE VRKL+C H FHK CL+ WL  F  TCPLCR  ++ DD V+  +R
Subjt:  CAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDIVAGYRR

AT2G01150.1 RING-H2 finger protein 2B6.0e-1437.5Show/hide
Query:  LLLLECVTLIRTIFGLR--PNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRC
        +LL    T  R +  L   P++   V+ T+    L ++ N    FS + + ++   C VCLS+ + GE VRKL C H FHK CL+ WL+     CPLCR 
Subjt:  LLLLECVTLIRTIFGLR--PNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRC

Query:  KVLP
         +LP
Subjt:  KVLP

AT2G04240.1 RING/U-box superfamily protein2.1e-1438.64Show/hide
Query:  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCK--VLPDD
        D RV     +L+    + PT+RF    +    +D++C+VCLS+F+    + KL+C H FHK CL+ W+  +  TCPLCR    V+P+D
Subjt:  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCK--VLPDD

AT2G04240.2 RING/U-box superfamily protein2.1e-1438.64Show/hide
Query:  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCK--VLPDD
        D RV     +L+    + PT+RF    +    +D++C+VCLS+F+    + KL+C H FHK CL+ W+  +  TCPLCR    V+P+D
Subjt:  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCK--VLPDD

AT3G19950.1 RING/U-box superfamily protein3.9e-1345.45Show/hide
Query:  PTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDD
        PT++ +K +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCATCACCCTTTTACTTCTCGAATGCGTTACTCTCATTCGCACCATCTTTGGTTTGAG
ACCTAACGCCGACAAGCGCGTAATTACGACGGCGCAGTTTTTGAAATTGATCGAGGAGAAGAATCCGACCATCCGATTCTCCAAGAAAGTCACATCGAGTTCGGACGATC
AGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGATGGTACGGAAATTGCAATGCAACCATACTTTTCACAAGGATTGCCTCGATAATTGGTTGAAACTCTTTTTT
GCTACCTGTCCGCTTTGCCGGTGTAAGGTTTTGCCGGACGATATCGTTGCCGGTTACCGCAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGACGAGGAGCTGATCTT
TTTGTTATCGGCATTACATGGTGGAGATGTTAGGAGGAGGACCAAAGGCTCTGTTTGTAGGCTCTAA
mRNA sequenceShow/hide mRNA sequence
AATTGAATCACTGGAAACTATCCGCCAATTTCCATCCCGAAGCCATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCATCACCCTTTTA
CTTCTCGAATGCGTTACTCTCATTCGCACCATCTTTGGTTTGAGACCTAACGCCGACAAGCGCGTAATTACGACGGCGCAGTTTTTGAAATTGATCGAGGAGAAGAATCC
GACCATCCGATTCTCCAAGAAAGTCACATCGAGTTCGGACGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGATGGTACGGAAATTGCAATGCAACCATA
CTTTTCACAAGGATTGCCTCGATAATTGGTTGAAACTCTTTTTTGCTACCTGTCCGCTTTGCCGGTGTAAGGTTTTGCCGGACGATATCGTTGCCGGTTACCGCAGGCTG
CGAGACCGTGTAGAGTACGACGGCAGCGACGAGGAGCTGATCTTTTTGTTATCGGCATTACATGGTGGAGATGTTAGGAGGAGGACCAAAGGCTCTGTTTGTAGGCTCTA
A
Protein sequenceShow/hide protein sequence
MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFF
ATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHGGDVRRRTKGSVCRL