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Carg00707 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00707
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPolyadenylate-binding protein, putative
Genome locationCarg_Chr03:6336517..6336999
RNA-Seq ExpressionCarg00707
SyntenyCarg00707
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9678890.1 hypothetical protein SADUNF_Sadunf07G0083200 [Salix dunnii]1.2e-0548.81Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFE--ISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNVR
        +E+AAL E+QAKVEKEMGAVQG     +++ Y +    +   +    S+ L + +  DPA AA ++  K EEADSRSVFVGNVR
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFE--ISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNVR

KAG6604042.1 hypothetical protein SDJN03_04651, partial [Cucurbita argyrosperma subsp. sororia]1.4e-83100Show/hide
Query:  MRFTAERSRWRKGTLTCPPPMTMPSRFSVTVFHYHKESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRE
        MRFTAERSRWRKGTLTCPPPMTMPSRFSVTVFHYHKESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRE
Subjt:  MRFTAERSRWRKGTLTCPPPMTMPSRFSVTVFHYHKESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRE

Query:  RKEEEADSRSVFVGNVRLELWSLSDHFFLFETEFNKYPLSFVYKELLKSKSEPIIGEIHK
        RKEEEADSRSVFVGNVRLELWSLSDHFFLFETEFNKYPLSFVYKELLKSKSEPIIGEIHK
Subjt:  RKEEEADSRSVFVGNVRLELWSLSDHFFLFETEFNKYPLSFVYKELLKSKSEPIIGEIHK

KAG6768465.1 hypothetical protein POTOM_027382 [Populus tomentosa]7.8e-0546.6Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVK--------FEISYEATVAT--SICLII----ISY-------TDPAGAAVSRERKEEEADSRSVFVG
        +E+AAL EMQAKVEKEMGAV        S  YV          E+S+ + + T  S+C+ +    I Y       TDPA AA ++  K EEADSRSVFVG
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVK--------FEISYEATVAT--SICLII----ISY-------TDPAGAAVSRERKEEEADSRSVFVG

Query:  NVR
        NVR
Subjt:  NVR

RWV91362.1 hypothetical protein GW17_00046358 [Ensete ventricosum]7.8e-0550Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGN
        +E+AAL EMQAKVEKEMG+VQ +     SL +  +   +   V   IC+      DPA AA S+  K EE DSRSVFVGN
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGN

XP_038882558.1 polyadenylate-binding protein 3-like isoform X1 [Benincasa hispida]3.1e-2276.54Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV
        +E+AAL EMQAKVEKEMGAVQGLPPSR +L Y+ FEISYEATV  S+ LI +S+TDPAG+AVS+E K EEADSRSVFVGNV
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV

TrEMBL top hitse value%identityAlignment
A0A0A0KG83 RRM domain-containing protein1.1e-0449.38Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV
        +E+AAL EMQAKVEKEMGAVQ                                  DPAG+AVS+E K EEADSRSVFVGNV
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV

A0A438KQT2 Polyadenylate-binding protein 21.9e-0445.98Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNVRLELWS
        +E+AAL EMQAKVEKEMGAVQ                                  DPA AAV++  K EEADSRSVFVGNVR+   S
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNVRLELWS

A0A444CZR6 Uncharacterized protein3.8e-0550Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGN
        +E+AAL EMQAKVEKEMG+VQ +     SL +  +   +   V   IC+      DPA AA S+  K EE DSRSVFVGN
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGN

A0A5A7T2C2 Polyadenylate-binding protein 2-like1.1e-0449.38Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV
        +E+AAL EMQAKVEKEMGAVQ                                  DPAG+AVS+E K EEADSRSVFVGNV
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV

D7T5U0 Uncharacterized protein1.9e-0445.98Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNVRLELWS
        +E+AAL EMQAKVEKEMGAVQ                                  DPA AAV++  K EEADSRSVFVGNVR+   S
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNVRLELWS

SwissProt top hitse value%identityAlignment
Q9LX90 Polyadenylate-binding protein 38.9e-0440.74Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV
        +E+AAL EMQAKVEKEMGA Q                                  DPA  A ++E K EE D+RSV+VGNV
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV

Arabidopsis top hitse value%identityAlignment
AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.3e-0540.74Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV
        +E+AAL EMQAKVEKEMGA Q                                  DPA  A ++E K EE D+RSV+VGNV
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV

AT5G10350.2 RNA-binding (RRM/RBD/RNP motifs) family protein6.3e-0540.74Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV
        +E+AAL EMQAKVEKEMGA Q                                  DPA  A ++E K EE D+RSV+VGNV
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV

AT5G51120.2 polyadenylate-binding protein 16.3e-0538.55Show/hide
Query:  KESAALGEMQAKVEKEMGAVQGLPPSRI--SLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV
        +E+ AL EMQAK EK+MGA QGL    +   L +V    S+  ++  S  L+   Y      +     ++EE DSRS++VGNV
Subjt:  KESAALGEMQAKVEKEMGAVQGLPPSRI--SLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRSVFVGNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTTACGGCGGAGAGATCCCGGTGGAGGAAGGGGACATTGACATGTCCGCCGCCGATGACGATGCCATCAAGGTTCTCCGTGACCGTCTTTCACTACCACAAGGA
ATCAGCTGCTCTTGGCGAAATGCAAGCCAAGGTAGAGAAGGAAATGGGCGCTGTTCAAGGTTTACCCCCGTCTCGAATTTCCTTACGCTATGTCAAATTTGAAATTTCAT
ATGAAGCTACCGTAGCAACTTCAATCTGCCTGATTATAATATCTTATACAGATCCCGCCGGTGCGGCTGTCAGTCGAGAAAGGAAGGAGGAGGAGGCAGATTCGCGATCC
GTATTTGTTGGCAACGTGAGATTAGAATTATGGTCTTTATCTGATCATTTCTTTCTATTTGAAACGGAGTTCAATAAATATCCATTAAGTTTTGTTTACAAAGAACTCTT
AAAATCTAAATCAGAGCCCATAATTGGGGAAATTCATAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTTACGGCGGAGAGATCCCGGTGGAGGAAGGGGACATTGACATGTCCGCCGCCGATGACGATGCCATCAAGGTTCTCCGTGACCGTCTTTCACTACCACAAGGA
ATCAGCTGCTCTTGGCGAAATGCAAGCCAAGGTAGAGAAGGAAATGGGCGCTGTTCAAGGTTTACCCCCGTCTCGAATTTCCTTACGCTATGTCAAATTTGAAATTTCAT
ATGAAGCTACCGTAGCAACTTCAATCTGCCTGATTATAATATCTTATACAGATCCCGCCGGTGCGGCTGTCAGTCGAGAAAGGAAGGAGGAGGAGGCAGATTCGCGATCC
GTATTTGTTGGCAACGTGAGATTAGAATTATGGTCTTTATCTGATCATTTCTTTCTATTTGAAACGGAGTTCAATAAATATCCATTAAGTTTTGTTTACAAAGAACTCTT
AAAATCTAAATCAGAGCCCATAATTGGGGAAATTCATAAATAA
Protein sequenceShow/hide protein sequence
MRFTAERSRWRKGTLTCPPPMTMPSRFSVTVFHYHKESAALGEMQAKVEKEMGAVQGLPPSRISLRYVKFEISYEATVATSICLIIISYTDPAGAAVSRERKEEEADSRS
VFVGNVRLELWSLSDHFFLFETEFNKYPLSFVYKELLKSKSEPIIGEIHK