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Carg00741 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00741
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSerine hydroxymethyltransferase
Genome locationCarg_Chr03:6499470..6504064
RNA-Seq ExpressionCarg00741
SyntenyCarg00741
Gene Ontology termsGO:0006565 - L-serine catabolic process (biological process)
GO:0019264 - glycine biosynthetic process from serine (biological process)
GO:0032259 - methylation (biological process)
GO:0035999 - tetrahydrofolate interconversion (biological process)
GO:0046655 - folic acid metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004372 - glycine hydroxymethyltransferase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
GO:0070905 - serine binding (molecular function)
InterPro domainsIPR001085 - Serine hydroxymethyltransferase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604075.1 hypothetical protein SDJN03_04684, partial [Cucurbita argyrosperma subsp. sororia]3.4e-35100Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

KAG7034241.1 hypothetical protein SDJN02_03968, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-50100Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWKDEAVEKWWPSSRERAICQVCKF
        MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWKDEAVEKWWPSSRERAICQVCKF
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWKDEAVEKWWPSSRERAICQVCKF

XP_022949662.1 serine hydroxymethyltransferase, mitochondrial [Cucurbita moschata]3.4e-35100Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

XP_022979027.1 serine hydroxymethyltransferase, mitochondrial [Cucurbita maxima]2.2e-3498.68Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MALAMALRRLSSSIDRP RHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

XP_023543259.1 serine hydroxymethyltransferase, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]3.4e-35100Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

TrEMBL top hitse value%identityAlignment
A0A6J1BUZ8 Serine hydroxymethyltransferase1.4e-3193.06Show/hide
Query:  MALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MALRRLSSS++RPVRHLLHGGSFC+LSSLPNE  YDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
Subjt:  MALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

A0A6J1GCP5 Serine hydroxymethyltransferase1.6e-35100Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

A0A6J1HF32 Serine hydroxymethyltransferase1.3e-3292.11Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MALAMALRRL SS+DRP+RHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLN+PLEVIDPEIA+IIE EKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

A0A6J1IMP0 Serine hydroxymethyltransferase1.1e-3498.68Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MALAMALRRLSSSIDRP RHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

A0A6J1KN96 Serine hydroxymethyltransferase1.3e-3292.11Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MALAMALRRL SS+DRP+RHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLN+PLEVIDPEIA+IIE EKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

SwissProt top hitse value%identityAlignment
P34899 Serine hydroxymethyltransferase, mitochondrial9.6e-2573.68Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MA+AMALR+LSSS+++  R L    S  Y SSLP+EAVYDKE PRV WPKQLN PLEVIDPEIA+IIELEKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

P49357 Serine hydroxymethyltransferase 1, mitochondrial2.5e-2572.37Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MA+A+ALRRLSSS D+P++ L +GG    +SSLP+EAVY+KERP V WPKQLN PLEV+DPEIA+IIELEKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

P49358 Serine hydroxymethyltransferase 2, mitochondrial1.8e-2371.05Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MA+A ALRRLSSS ++P++ L +GG    +SSLP+EAVY+KERP V WPKQLN PLEV DPEIA+IIELEKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

P50433 Serine hydroxymethyltransferase, mitochondrial8.7e-2672.37Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MA+A+ALRRLS+++D+PV+ L +GGS  Y+SSLPNEAVYDKE+  V WPKQLN PLEV+DPEIA+IIE EKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

Q9SZJ5 Serine hydroxymethyltransferase 1, mitochondrial6.2e-2473.68Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MA+AMALRRLSSSID+P+R L+   S CY+SSLP+EAV +KER RV WPKQLN PLE +DPEIA+IIE EKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

Arabidopsis top hitse value%identityAlignment
AT4G37930.1 serine transhydroxymethyltransferase 14.4e-2573.68Show/hide
Query:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        MA+AMALRRLSSSID+P+R L+   S CY+SSLP+EAV +KER RV WPKQLN PLE +DPEIA+IIE EKARQWK
Subjt:  MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

AT5G26780.1 serine hydroxymethyltransferase 22.9e-1656Show/hide
Query:  LAMALRRLSSSIDRPVRHL-LHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        +A+ALRRLSSS+ +P+  L  +GGS  ++SSL   A+ + E+ R  W KQLN  L+ IDPE+A+IIELEKARQWK
Subjt:  LAMALRRLSSSIDRPVRHL-LHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

AT5G26780.2 serine hydroxymethyltransferase 22.9e-1656Show/hide
Query:  LAMALRRLSSSIDRPVRHL-LHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        +A+ALRRLSSS+ +P+  L  +GGS  ++SSL   A+ + E+ R  W KQLN  L+ IDPE+A+IIELEKARQWK
Subjt:  LAMALRRLSSSIDRPVRHL-LHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK

AT5G26780.3 serine hydroxymethyltransferase 22.9e-1656Show/hide
Query:  LAMALRRLSSSIDRPVRHL-LHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK
        +A+ALRRLSSS+ +P+  L  +GGS  ++SSL   A+ + E+ R  W KQLN  L+ IDPE+A+IIELEKARQWK
Subjt:  LAMALRRLSSSIDRPVRHL-LHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTGGCAATGGCGCTACGAAGGCTTTCTTCTTCCATTGACAGGCCCGTTCGTCACCTCCTCCATGGCGGCTCTTTCTGTTATCTGTCTTCTTTGCCCAACGAAGC
TGTCTATGACAAGGAGAGACCACGCGTTCCGTGGCCTAAACAATTGAATGATCCGCTCGAGGTAATTGATCCGGAAATCGCGAACATAATTGAACTCGAAAAGGCCAGAC
AATGGAAGGATGAAGCAGTCGAGAAATGGTGGCCAAGCAGTCGAGAACGGGCCATATGTCAAGTATGTAAGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTGGCAATGGCGCTACGAAGGCTTTCTTCTTCCATTGACAGGCCCGTTCGTCACCTCCTCCATGGCGGCTCTTTCTGTTATCTGTCTTCTTTGCCCAACGAAGC
TGTCTATGACAAGGAGAGACCACGCGTTCCGTGGCCTAAACAATTGAATGATCCGCTCGAGGTAATTGATCCGGAAATCGCGAACATAATTGAACTCGAAAAGGCCAGAC
AATGGAAGGATGAAGCAGTCGAGAAATGGTGGCCAAGCAGTCGAGAACGGGCCATATGTCAAGTATGTAAGTTTTAATTATCTTATGTCCTCAAATTTAGCGGAGCTTGA
GGTGTATATAATATGCATATTGAAGTTATCTACCAAAATAAATTGACCTGGTCCAGCATGTTTATTTTTCAATAGTTTCTCATCATTTAGAATATATTAATTATTAAATC
Protein sequenceShow/hide protein sequence
MALAMALRRLSSSIDRPVRHLLHGGSFCYLSSLPNEAVYDKERPRVPWPKQLNDPLEVIDPEIANIIELEKARQWKDEAVEKWWPSSRERAICQVCKF