; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg00789 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00789
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L26
Genome locationCarg_Chr03:6743018..6743458
RNA-Seq ExpressionCarg00789
SyntenyCarg00789
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005756 - Ribosomal protein L26/L24, eukaryotic/archaeal
IPR005824 - KOW
IPR005825 - Ribosomal protein L24/L26, conserved site
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR041988 - Ribosomal protein L26/L24, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141862.1 60S ribosomal protein L26-1 [Cucumis sativus]1.1e-6997.26Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI P
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLLDRKGKGRAA+DKDKGTKFTAEDIMQSVD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

XP_022132426.1 60S ribosomal protein L26-1 [Momordica charantia]4.1e-6996.58Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRVSSSRRK+RKAHFSAPSSVRRVIMS+PLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINP
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLLDRK KGRAA+DKDKGTKFTAEDIMQSVD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

XP_022950899.1 60S ribosomal protein L26-1 [Cucurbita moschata]3.3e-71100Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

XP_022963400.1 60S ribosomal protein L26-1-like [Cucurbita moschata]1.8e-6997.26Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINP
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLLDRKGKGRAA+DKDKGTKF+AEDIMQSVD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

XP_038880918.1 60S ribosomal protein L26-1 [Benincasa hispida]5.3e-6996.58Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRVSSSRRKSRKAHF+APSSVRRVIMSAPLS+DLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGI P
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLLDRKGKGRAA+DKDKGTKFTAEDIMQSVD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

TrEMBL top hitse value%identityAlignment
A0A0A0KGI0 KOW domain-containing protein5.2e-7097.26Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI P
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLLDRKGKGRAA+DKDKGTKFTAEDIMQSVD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

A0A1S3B106 60S ribosomal protein L26-15.2e-7097.26Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI P
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLLDRKGKGRAA+DKDKGTKFTAEDIMQSVD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

A0A5D3CR35 Ribosomal protein L26/L24P, eukaryotic/archaeal5.2e-7097.26Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI P
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLLDRKGKGRAA+DKDKGTKFTAEDIMQSVD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

A0A6J1GH60 60S ribosomal protein L26-11.6e-71100Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

A0A6J1INB1 60S ribosomal protein L26-11.6e-71100Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

SwissProt top hitse value%identityAlignment
P51414 60S ribosomal protein L26-12.6e-6687.67Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRGTYKGREGKVVQVYR+KWVIHIERITREKVNG+TVNVGI P
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLL+RK KGRAA+DK+KGTKFT+ED+MQ+VD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

P61254 60S ribosomal protein L261.6e-4469.01Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGRE-GKVVQVYRKKWVIHIERITREKVNGSTVNVGIN
        MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG YKG++ GKVVQVYRKK+VI+IER+ REK NG+TV+VGI+
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGRE-GKVVQVYRKKWVIHIERITREKVNGSTVNVGIN

Query:  PSKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDI
        PSKVVIT+L+LDKDRK +L+RK K R    K+KG K+  E I
Subjt:  PSKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDI

P61257 60S ribosomal protein L261.6e-4469.01Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGRE-GKVVQVYRKKWVIHIERITREKVNGSTVNVGIN
        MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG YKG++ GKVVQVYRKK+VI+IER+ REK NG+TV+VGI+
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGRE-GKVVQVYRKKWVIHIERITREKVNGSTVNVGIN

Query:  PSKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDI
        PSKVVIT+L+LDKDRK +L+RK K R    K+KG K+  E I
Subjt:  PSKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDI

Q39411 60S ribosomal protein L261.6e-6081.38Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRV+SSRR++RK HF+A SS RRV MS+PLSTDLR KYNVRSMPIRKDDE Q+VRGTYKGREGK+ QVYR+K VIHIER+TREKVNG+TVNVG+ P
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSV
        +KVVITKLRLDKDRKSLL+RK KGRAA+DKDKGTKFTA D+MQ+V
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSV

Q9FJX2 60S ribosomal protein L26-29.2e-6483.56Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRGT+KGREGKV+QVYR+KWVIHIERITREKVNGSTVNVG+N 
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        S V+ITKLRLDKDRKSLL+RK  GRAA+DK+KGTKF+AED+M++VD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

Arabidopsis top hitse value%identityAlignment
AT3G49910.1 Translation protein SH3-like family protein1.8e-6787.67Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRGTYKGREGKVVQVYR+KWVIHIERITREKVNG+TVNVGI P
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        SKVVITKLRLDKDRKSLL+RK KGRAA+DK+KGTKFT+ED+MQ+VD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

AT5G67510.1 Translation protein SH3-like family protein6.5e-6583.56Show/hide
Query:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP
        MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRGT+KGREGKV+QVYR+KWVIHIERITREKVNGSTVNVG+N 
Subjt:  MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINP

Query:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
        S V+ITKLRLDKDRKSLL+RK  GRAA+DK+KGTKF+AED+M++VD
Subjt:  SKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGA
CCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATC
GTAAAAAGTGGGTTATCCATATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTCAATGTTGGTATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTG
GACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCTCTGATAAGGACAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTA
A
mRNA sequenceShow/hide mRNA sequence
ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGA
CCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATC
GTAAAAAGTGGGTTATCCATATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTCAATGTTGGTATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTG
GACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCTCTGATAAGGACAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTA
A
Protein sequenceShow/hide protein sequence
MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRL
DKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD