CuGenDBv2

Gene ID	Carg00830
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Polysacc_synt_4 domain-containing protein
Genome location	Carg_Chr03:6956185..6956469
RNA-Seq Expression	Carg00830
Synteny	Carg00830
Gene Ontology terms	GO:0009834 - plant-type secondary cell wall biogenesis (biological process) GO:0045492 - xylan biosynthetic process (biological process) GO:0000139 - Golgi membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR006514 - IRX15/IRX15L/IGXM

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6604166.1 Protein IRX15-LIKE protein, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-31

93.48

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Query:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK
        MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIV   + STATPL TTVINTLLYYASK
Subjt:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK

KAG7034330.1 Protein IRX15-LIKE protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-36

100

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Query:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASKIQ
        MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASKIQ
Subjt:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASKIQ

XP_022949759.1 protein IRX15-LIKE-like [Cucurbita moschata]

8.3e-31

92.39

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Query:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK
        MKPNP+NTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIV   + STATPL TTVINTLLYYASK
Subjt:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK

XP_022977597.1 protein IRX15-LIKE [Cucurbita maxima]

3.7e-31

92.39

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Query:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK
        MKPNPNNTRLILLHPYIHKQGTSSKIWLLAF+SFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIV   + STATPL TTVINTLLYYASK
Subjt:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK

XP_023545025.1 protein IRX15-LIKE-like [Cucurbita pepo subsp. pepo]

2.2e-31

93.48

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Query:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK
        MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIV   + STATPL TTVINTLLYYASK
Subjt:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KID2 Polysacc_synt_4 domain-containing protein

4.3e-25

79.35

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Query:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK
        MKPN NNTRLILLHPYI KQGTSSKIWLLAFLSFF+LAFLLLLLL+YTRASTTPI A++++ +SS   S+ +S+ATPL TTVINTLLYYASK
Subjt:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK

A0A1S3B0D8 protein IRX15-LIKE

1.0e-26

82.8

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Query:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPI-AASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK
        MKPNPNNTRLILLHPYI KQGTSSKIWLLAFLSFF+LAFLLLLLL+YTRASTTPI AAS+ V++SS   S+++S+ATPL TTVINTLLYYASK
Subjt:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPI-AASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK

A0A6J1BSU1 protein IRX15-LIKE

2.7e-19

76.09

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Query:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK
        MKPNPNNTRLILLHPYI KQGTSSKIWLLAFLSFF+L F LL+L+ YTRAS TP+ AS+T AA   VVS+A S    L TTVINTLLYYASK
Subjt:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK

A0A6J1GDV7 protein IRX15-LIKE-like

4.0e-31

92.39

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Query:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK
        MKPNP+NTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIV   + STATPL TTVINTLLYYASK
Subjt:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK

A0A6J1IIY7 protein IRX15-LIKE

1.8e-31

92.39

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Query:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK
        MKPNPNNTRLILLHPYIHKQGTSSKIWLLAF+SFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIV   + STATPL TTVINTLLYYASK
Subjt:  MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASK

SwissProt top hits

e value

%identity

Alignment

Q9FH92 Protein IRX15-LIKE

2.4e-09

50.53

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Query:  MKPNPN-NTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTAT--PLSTTVINTLLYYASK
        MK   N NT+LIL+HPYI KQ +++++WLLAF+SFF++AF  LL LLYT  S   I++    A  S  V++A +TAT   L TT IN +L+YAS+
Subjt:  MKPNPN-NTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTAT--PLSTTVINTLLYYASK

Q9SNE5 Protein IRREGULAR XYLEM 15

2.4e-09

51.06

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Query:  NTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAAST---ATPLS-----TTVINTLLYYASK
        NT+LILLHPYI KQ +++++WLLAF+SFF++ F  LL LLYTR  T P + +T+VAA+   V T  ST   ++P+S     T+ IN LL+YAS+
Subjt:  NTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAAST---ATPLS-----TTVINTLLYYASK

Arabidopsis top hits

e value

%identity

Alignment

AT3G50220.1 Protein of unknown function (DUF579)

1.7e-10

51.06

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Query:  NTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAAST---ATPLS-----TTVINTLLYYASK
        NT+LILLHPYI KQ +++++WLLAF+SFF++ F  LL LLYTR  T P + +T+VAA+   V T  ST   ++P+S     T+ IN LL+YAS+
Subjt:  NTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAAST---ATPLS-----TTVINTLLYYASK

AT5G67210.1 Protein of unknown function (DUF579)

1.7e-10

50.53

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Query:  MKPNPN-NTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTAT--PLSTTVINTLLYYASK
        MK   N NT+LIL+HPYI KQ +++++WLLAF+SFF++AF  LL LLYT  S   I++    A  S  V++A +TAT   L TT IN +L+YAS+
Subjt:  MKPNPN-NTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTAT--PLSTTVINTLLYYASK

Sequences

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CDS sequence

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ATGAAACCCAATCCCAATAACACCAGGCTCATTCTCCTCCACCCTTACATCCACAAACAAGGCACCTCCTCCAAGATTTGGCTGCTCGCCTTCCTGTCCTTCTTCTCCCT
CGCCTTCCTCCTCCTCCTCCTCCTCCTCTACACTCGCGCCTCCACTACTCCCATCGCTGCTTCCACTACTGTTGCCGCCTCTTCCATCGTCGTCTCCACCGCCGCCTCCA
CCGCCACCCCTCTTTCCACCACCGTCATCAACACCCTTCTCTACTACGCCTCCAAGATCCAATGA

mRNA sequence

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Protein sequence

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MKPNPNNTRLILLHPYIHKQGTSSKIWLLAFLSFFSLAFLLLLLLLYTRASTTPIAASTTVAASSIVVSTAASTATPLSTTVINTLLYYASKIQ

Carg00830 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome