CuGenDBv2

Gene ID	Carg00872
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	tRNase Z TRZ1
Genome location	Carg_Chr03:7172970..7174282
RNA-Seq Expression	Carg00872
Synteny	Carg00872
Gene Ontology terms	GO:0034414 - tRNA 3'-trailer cleavage, endonucleolytic (biological process) GO:0042781 - 3'-tRNA processing endoribonuclease activity (molecular function)
InterPro domains	IPR036866 - Ribonuclease Z/Hydroxyacylglutathione hydrolase-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6604210.1 tRNase Z TRZ1, partial [Cucurbita argyrosperma subsp. sororia]

4.5e-53

99.1

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        +VTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        AGRVSALTEGF
Subjt:  AGRVSALTEGF

KAG7034371.1 tRNase Z TRZ1, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-61

100

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Query:  MHNYLGCFYLCQVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEI
        MHNYLGCFYLCQVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEI
Subjt:  MHNYLGCFYLCQVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEI

Query:  QQAVAALPPPLAGRVSALTEGF
        QQAVAALPPPLAGRVSALTEGF
Subjt:  QQAVAALPPPLAGRVSALTEGF

XP_022950835.1 tRNase Z TRZ1 [Cucurbita moschata]

1.3e-52

98.2

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        +VTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVA LPPPL
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        AGRVSALTEGF
Subjt:  AGRVSALTEGF

XP_022979026.1 tRNase Z TRZ1 [Cucurbita maxima]

4.5e-53

99.1

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        +VTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        AGRVSALTEGF
Subjt:  AGRVSALTEGF

XP_023543256.1 tRNase Z TRZ1 isoform X1 [Cucurbita pepo subsp. pepo]

4.5e-53

99.1

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        +VTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        AGRVSALTEGF
Subjt:  AGRVSALTEGF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C5G3 nuclear ribonuclease Z

1.5e-49

90.99

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        ++TYTIT+PEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHA+KFKNKAIL+IHFSARYTTEEIQ+A++ LPP L
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        AGRVSALTEGF
Subjt:  AGRVSALTEGF

A0A5A7V6W7 Nuclear ribonuclease Z

1.0e-50

91.89

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        ++TYTIT+PEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHA+KFKNKAIL+IHFSARYTTEEIQ+A++ LPPPL
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        AGRVSALTEGF
Subjt:  AGRVSALTEGF

A0A6J1BWD5 tRNase Z TRZ1

2.5e-49

90.09

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        +VTYTI++PEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLEN+VTVEHAREYGHTHL EIINHA+KFKNKA+L+IHFSARYTTEEIQQ +AALPPPL
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        AGRV ALTEGF
Subjt:  AGRVSALTEGF

A0A6J1GGV3 tRNase Z TRZ1

6.3e-53

98.2

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        +VTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVA LPPPL
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        AGRVSALTEGF
Subjt:  AGRVSALTEGF

A0A6J1IPL7 tRNase Z TRZ1

2.2e-53

99.1

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        +VTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        AGRVSALTEGF
Subjt:  AGRVSALTEGF

SwissProt top hits

e value

%identity

Alignment

Q8L633 tRNase Z TRZ2, chloroplastic

1.4e-25

48.65

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        ++T TI  PE+AFTGDTTS++++D  N D LRAK+L+ E+TFL+   + EHA+  GHTH+ +II +A+  ++K +L+ HFS+RY  EEI++AV  L   +
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        + +V  LTEGF
Subjt:  AGRVSALTEGF

Q8LGU7 tRNase Z TRZ1

3.1e-41

72.07

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        ++T +I  PEVAFTGDTTSDF+VDE N D L+AK+LVMESTFL++ V+VEHAR+YGH H+ EI+NHAEKF+NKAIL+IHFSARYT +EI+ AV+ALPPPL
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
         GRV ALT+GF
Subjt:  AGRVSALTEGF

Arabidopsis top hits

e value

%identity

Alignment

AT1G74700.1 tRNAse Z1

2.2e-42

72.07

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        ++T +I  PEVAFTGDTTSDF+VDE N D L+AK+LVMESTFL++ V+VEHAR+YGH H+ EI+NHAEKF+NKAIL+IHFSARYT +EI+ AV+ALPPPL
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
         GRV ALT+GF
Subjt:  AGRVSALTEGF

AT2G04530.1 Metallo-hydrolase/oxidoreductase superfamily protein

1.0e-26

48.65

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Query:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL
        ++T TI  PE+AFTGDTTS++++D  N D LRAK+L+ E+TFL+   + EHA+  GHTH+ +II +A+  ++K +L+ HFS+RY  EEI++AV  L   +
Subjt:  QVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPPL

Query:  AGRVSALTEGF
        + +V  LTEGF
Subjt:  AGRVSALTEGF

Sequences

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CDS sequence

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mRNA sequence

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ATGCATAACTATCTTGGTTGTTTTTATTTGTGCCAGGTTACTTACACAATTACCGATCCTGAAGTGGCTTTTACAGGTGATACCACATCCGACTTCATAGTTGATGAAAA
TAATATTGACGTGTTGAGGGCAAAGATTCTAGTTATGGAGAGCACATTCCTTGAAAATAGAGTTACAGTGGAGCATGCAAGAGAGTACGGACACACTCACCTGTTTGAGA
TAATAAACCATGCCGAGAAGTTTAAGAACAAAGCGATTCTTATGATTCACTTTTCAGCTCGCTACACTACAGAGGAAATTCAGCAAGCCGTAGCTGCTTTACCTCCACCT
TTAGCAGGCCGAGTTTCTGCGCTAACGGAAGGTTTTTGAGAGAAAGGTATTCAGAAGAGTTTCGGAAATCATTTTGCCCATTTTTATGATTGTTACAACAATCATTCAGT
TCATGTATACTTCTTTTTTAGTTGTTTTATTGTGAATTTTCATGATTTGTTTCCACAAATGATTTATTTTTACTGTCAAAATGATGTTGATGCTTTCCAATTGGGCCATC
TGTATTTTTGTTAGGGAAAATTCAAAATCAAACTCTTGTTACATTTGAGGATATTAATTGAATTAGCTCCGGCAGTTTACGACTGTCAGTGAAGCTTATATGCGTTACTT
GAATATTTTAAGTAGATACCATGTTATTCAA

Protein sequence

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MHNYLGCFYLCQVTYTITDPEVAFTGDTTSDFIVDENNIDVLRAKILVMESTFLENRVTVEHAREYGHTHLFEIINHAEKFKNKAILMIHFSARYTTEEIQQAVAALPPP
LAGRVSALTEGF

Carg00872 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome