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Carg00956 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00956
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRAB GTPase homolog C2B
Genome locationCarg_Chr06:1917335..1917983
RNA-Seq ExpressionCarg00956
SyntenyCarg00956
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0012505 - endomembrane system (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001806 - Small GTPase
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596496.1 Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. sororia]1.2e-27100Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

KAG7028044.1 Ras-related protein RABC2a [Cucurbita argyrosperma subsp. argyrosperma]3.9e-34100Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDTGICSFWFKF
        MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDTGICSFWFKF
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDTGICSFWFKF

XP_022936998.1 ras-related protein RABC2a-like [Cucurbita moschata]1.2e-27100Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

XP_023005146.1 ras-related protein RABC2a-like [Cucurbita maxima]2.7e-2798.55Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFIST+AENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

XP_038905103.1 ras-related protein RABC2a-like [Benincasa hispida]1.7e-2695.65Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFIST+A+NLAPTIGVDFKIKLL+VGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

TrEMBL top hitse value%identityAlignment
A0A0A0LGE4 Uncharacterized protein8.5e-2795.65Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFIST+A+NLAPTIGVDFKIKLL+VGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

A0A1S3B6E7 ras-related protein RABC2a8.5e-2795.65Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFIST+A+NLAPTIGVDFKIKLL+VGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

A0A5A7TKX7 Ras-related protein RABC2a8.5e-2795.65Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFIST+A+NLAPTIGVDFKIKLL+VGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

A0A6J1FET8 ras-related protein RABC2a-like5.9e-28100Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

A0A6J1KU45 ras-related protein RABC2a-like1.3e-2798.55Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFIST+AENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

SwissProt top hitse value%identityAlignment
O23657 Ras-related protein RABC16.3e-1971.01Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQ   +D  FKVLLIGDSGVGKSSLLLSF S + ++L+PTIGVDFK+K L +G K+LKL IWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

O49841 Ras-related protein RABC2a1.0e-2486.96Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQ S YDLSFK+LLIGDSGVGKSSLL+SFIS+S E+LAPTIGVDFKIK L VGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

P62820 Ras-related protein Rab-1A2.5e-1257.58Show/hide
Query:  SGQSSNYDLSFKVLLIGDSGVGKSSLLLSFI-STSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        S  +  YD  FK+LLIGDSGVGKS LLL F   T  E+   TIGVDFKI+ +++ GK +KL IWDT
Subjt:  SGQSSNYDLSFKVLLIGDSGVGKSSLLLSFI-STSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

P62822 Ras-related protein Rab-1A2.5e-1257.58Show/hide
Query:  SGQSSNYDLSFKVLLIGDSGVGKSSLLLSFI-STSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        S  +  YD  FK+LLIGDSGVGKS LLL F   T  E+   TIGVDFKI+ +++ GK +KL IWDT
Subjt:  SGQSSNYDLSFKVLLIGDSGVGKSSLLLSFI-STSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

Q9SF92 Ras-related protein RABC2b3.8e-2485.51Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQ S YDLSFK+LLIGDSGVGKSSLLLSFIS+S E+LAPTIGVDFKIK ++V GKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

Arabidopsis top hitse value%identityAlignment
AT1G43890.1 RAB GTPASE HOMOLOG B184.4e-2071.01Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQ   +D  FKVLLIGDSGVGKSSLLLSF S + ++L+PTIGVDFK+K L +G K+LKL IWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

AT3G09910.1 RAB GTPase homolog C2B2.7e-2585.51Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQ S YDLSFK+LLIGDSGVGKSSLLLSFIS+S E+LAPTIGVDFKIK ++V GKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

AT3G09910.2 RAB GTPase homolog C2B2.7e-2585.51Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQ S YDLSFK+LLIGDSGVGKSSLLLSFIS+S E+LAPTIGVDFKIK ++V GKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

AT3G09910.3 RAB GTPase homolog C2B2.7e-2585.51Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQ S YDLSFK+LLIGDSGVGKSSLLLSFIS+S E+LAPTIGVDFKIK ++V GKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT

AT5G03530.1 RAB GTPase homolog C2A7.1e-2686.96Show/hide
Query:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT
        MGSSSGQ S YDLSFK+LLIGDSGVGKSSLL+SFIS+S E+LAPTIGVDFKIK L VGGKRLKLTIWDT
Subjt:  MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCTTCTTCCGGCCAGAGTAGCAACTACGATCTGTCTTTTAAGGTTTTGTTGATCGGCGATTCAGGTGTCGGCAAGAGTAGTCTTCTTCTCAGCTTTATCTCTAC
TAGTGCTGAAAATCTTGCCCCTACTATTGGTGTGGATTTTAAGATCAAGCTGCTTCAGGTGGGTGGGAAGAGATTGAAGCTGACAATCTGGGACACTGGTATCTGTTCTT
TTTGGTTCAAATTCTAG
mRNA sequenceShow/hide mRNA sequence
AAAGGGCAAAGAACAAATACGTTGTTGTCTCAGCTGGTGCTCGCTCGCTCGCTCACTTCCCCGTTTTCTTGGAACTTATTCTTCTCTTTTCTTGCAACAATCAAACATAA
TTCCAATTCTTTTTCCTTTTTCTACTCTCTCTGAATTCTGTTTCATTCCTGAAGAAGAAGATCATCCAAATGGGATCTTCTTCCGGCCAGAGTAGCAACTACGATCTGTC
TTTTAAGGTTTTGTTGATCGGCGATTCAGGTGTCGGCAAGAGTAGTCTTCTTCTCAGCTTTATCTCTACTAGTGCTGAAAATCTTGCCCCTACTATTGGTGTGGATTTTA
AGATCAAGCTGCTTCAGGTGGGTGGGAAGAGATTGAAGCTGACAATCTGGGACACTGGTATCTGTTCTTTTTGGTTCAAATTCTAG
Protein sequenceShow/hide protein sequence
MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTSAENLAPTIGVDFKIKLLQVGGKRLKLTIWDTGICSFWFKF