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Carg01010 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01010
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNuclear transcription factor Y subunit B
Genome locationCarg_Chr06:1664127..1667642
RNA-Seq ExpressionCarg01010
SyntenyCarg01010
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003956 - Transcription factor, NFYB/HAP3, conserved site
IPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596449.1 putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. sororia]1.7e-57100Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

KAG7027991.1 Nuclear transcription factor Y subunit B-8 [Cucurbita argyrosperma subsp. argyrosperma]6.8e-59100Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRETG
        DYIDPLKTYLTKYRETG
Subjt:  DYIDPLKTYLTKYRETG

XP_004137802.1 nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis sativus]3.8e-5799.14Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRET
        DYIDPLKTYLTKYRET
Subjt:  DYIDPLKTYLTKYRET

XP_022948121.1 nuclear transcription factor Y subunit B-1-like [Cucurbita moschata]4.4e-58100Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRET
        DYIDPLKTYLTKYRET
Subjt:  DYIDPLKTYLTKYRET

XP_023529112.1 nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita pepo subsp. pepo]3.8e-5799.14Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRET
        DYIDPLKTYLTKYRET
Subjt:  DYIDPLKTYLTKYRET

TrEMBL top hitse value%identityAlignment
A0A5D3DNK1 Nuclear transcription factor Y subunit B-11.8e-5799.14Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRET
        DYIDPLKTYLTKYRET
Subjt:  DYIDPLKTYLTKYRET

A0A6J1FB03 nuclear transcription factor Y subunit B-1-like isoform X11.8e-5799.14Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRET
        DYIDPLKTYLTKYRET
Subjt:  DYIDPLKTYLTKYRET

A0A6J1G8V7 nuclear transcription factor Y subunit B-1-like2.1e-58100Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRET
        DYIDPLKTYLTKYRET
Subjt:  DYIDPLKTYLTKYRET

A0A6J1J2H6 nuclear transcription factor Y subunit B-1-like isoform X11.8e-5799.14Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRET
        DYIDPLKTYLTKYRET
Subjt:  DYIDPLKTYLTKYRET

A0A6J1KSG0 nuclear transcription factor Y subunit B-1-like2.1e-58100Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRET
        DYIDPLKTYLTKYRET
Subjt:  DYIDPLKTYLTKYRET

SwissProt top hitse value%identityAlignment
P25209 Nuclear transcription factor Y subunit B1.2e-5086.89Show/hide
Query:  MADAPASP--GGGSHESGEHSPR-----SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWA
        MA+APASP  GGGSHESG  SPR      +VREQDRFLPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWA
Subjt:  MADAPASP--GGGSHESGEHSPR-----SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWA

Query:  MATLGFEDYIDPLKTYLTKYRE
        MATLGFEDYI+PLK YL KYRE
Subjt:  MATLGFEDYIDPLKTYLTKYRE

Q60EQ4 Nuclear transcription factor Y subunit B-33.0e-4981.4Show/hide
Query:  MADAPASP--GGGSHESGEHSPR------------SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN
        MAD P SP  GGGSHESG  SPR              VREQDRFLPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN
Subjt:  MADAPASP--GGGSHESGEHSPR------------SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN

Query:  GDDLLWAMATLGFEDYIDPLKTYLTKYRE
        GDDLLWAMATLGFEDYI+PLK YL KYRE
Subjt:  GDDLLWAMATLGFEDYIDPLKTYLTKYRE

Q67XJ2 Nuclear transcription factor Y subunit B-102.5e-4888.99Show/hide
Query:  GGGSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
        GGGSHES G+ SPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
Subjt:  GGGSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL

Query:  KTYLTKYRE
        K YL +YRE
Subjt:  KTYLTKYRE

Q8VYK4 Nuclear transcription factor Y subunit B-83.7e-4784.03Show/hide
Query:  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYRE
        LGFEDY++PLK YL +YRE
Subjt:  LGFEDYIDPLKTYLTKYRE

Q9SLG0 Nuclear transcription factor Y subunit B-16.9e-4679.13Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQECVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DY++PLK YL +YRE
Subjt:  DYIDPLKTYLTKYRE

Arabidopsis top hitse value%identityAlignment
AT2G37060.1 nuclear factor Y, subunit B82.6e-4884.03Show/hide
Query:  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYRE
        LGFEDY++PLK YL +YRE
Subjt:  LGFEDYIDPLKTYLTKYRE

AT2G37060.2 nuclear factor Y, subunit B82.6e-4884.03Show/hide
Query:  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYRE
        LGFEDY++PLK YL +YRE
Subjt:  LGFEDYIDPLKTYLTKYRE

AT2G37060.3 nuclear factor Y, subunit B82.6e-4884.03Show/hide
Query:  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYRE
        LGFEDY++PLK YL +YRE
Subjt:  LGFEDYIDPLKTYLTKYRE

AT2G38880.2 nuclear factor Y, subunit B14.9e-4779.13Show/hide
Query:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQECVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFE
Subjt:  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DY++PLK YL +YRE
Subjt:  DYIDPLKTYLTKYRE

AT3G53340.1 nuclear factor Y, subunit B101.8e-4988.99Show/hide
Query:  GGGSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
        GGGSHES G+ SPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
Subjt:  GGGSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL

Query:  KTYLTKYRE
        K YL +YRE
Subjt:  KTYLTKYRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCAAATATTAG
TAGGATCATGAAGAAGGCTCTTCCGGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTA
GTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTG
ACGAAATACAGAGAGACAGGGTGA
mRNA sequenceShow/hide mRNA sequence
AGGGGGAAAGCAAAAACGAACGGTGCTGATAAGCTTGATTCTCTCATCTCAGTCGTCTCCTTTCTCCTACCTTCACCATCGTCCGATCCATTCCACCACTCCATTTCCAC
CCGATCTAAATCCCTTCCCTCTCCCGCGCCCAAATTACAAATCCCCTTCCGTTTCTTCTCCCACCAGATAGGGTAGTGAAGAACATGGCTGATGCTCCGGCGAGCCCTGG
CGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCAAATATTAGTAGGATCATGAAGAAGGCTCTTCCGG
CTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGG
AAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGACAGGGTGACA
CTAAGGGGTCTGCTAAAGGTGGCGATGCGTCAGCTAAGAAGGAAGCTCATCCAACCCCTGGTGCTCAGGTTGCTCATCAAGGGACGTTTTCCCAAGGAGTTAATTATGGA
AGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGCACCGACTAAACTTGCCTCGAATTCGACCATTTAAACTGTTGAATACGGAGATCGTTGTTCAGCAT
AACAGCAAAAAAAATCGAGTCTATTTATTTGAAGTTTGGGTGGTTTCAATACTTTGTAGAAACAGTTGAAATGTTGTATATTATTATGGCTCTTGTTTATTGGATTGGAA
TAGGACACAACATTTAAGAGAGGTTCCTTCCAAGTCCTGGGGATCCCATTTATTGGTGACTTGTAGTAAACCTTACAACCCTAGCAAGGACTTGGATGGAAGATCTTGAA
AAAGACCCTTCACATTTTCTTTAATCATTTCCCTAATCAAAACAATAAATTTGTGTTCTCAGGAACGAATGATTTGGTTCTAGAAGTGTTCTTAAACCCTCCTTTGCTGT
AAGATGAAATGAATGGTTTTTCATTGTGTTGATCTCTGGTCGTTGTCTTGTTTGTTTGTTTGTTTTTTACTGTTATATTCCCTTTGGGGGAAAAGTAAAAGTAGTTTCCC
TACCAAAAGTGTTTGCTTCATATCTACT
Protein sequenceShow/hide protein sequence
MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYL
TKYRETG