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Carg01019 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01019
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein MODIFIER OF SNC1 11-like
Genome locationCarg_Chr06:1620605..1621665
RNA-Seq ExpressionCarg01019
SyntenyCarg01019
Gene Ontology termsGO:0016973 - poly(A)+ mRNA export from nucleus (biological process)
InterPro domainsIPR040746 - THO1_MOS11, C-terminal domain
IPR044209 - Protein MODIFIER OF SNC1 11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580577.1 WRKY transcription factor 44, partial [Cucurbita argyrosperma subsp. sororia]5.4e-2752.17Show/hide
Query:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA
        MATDF+ EL    LPG +  +  +LG AAAGNG+VD+ Q  R   +GPS S   TATKEG ES+RA                 KIRR ERFGIPVRLSEA
Subjt:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA

Query:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF
        EKRFS                          RAERFELLTLSM+TDEEAKKKARL RF+PF
Subjt:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF

KAG7017329.1 Protein MODIFIER OF SNC1 11 [Cucurbita argyrosperma subsp. argyrosperma]5.4e-2752.17Show/hide
Query:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA
        MATDF+ EL    LPG +  +  +LG AAAGNG+VD+ Q  R   +GPS S   TATKEG ES+RA                 KIRR ERFGIPVRLSEA
Subjt:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA

Query:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF
        EKRFS                          RAERFELLTLSM+TDEEAKKKARL RF+PF
Subjt:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF

KAG7027982.1 Protein MODIFIER OF SNC1 11, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-56100Show/hide
Query:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRADKIRRVERFGIPVRLSEAEKRFSRAERFELLTLS
        MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRADKIRRVERFGIPVRLSEAEKRFSRAERFELLTLS
Subjt:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRADKIRRVERFGIPVRLSEAEKRFSRAERFELLTLS

Query:  MSTDEEAKKKARLARFAPFS
        MSTDEEAKKKARLARFAPFS
Subjt:  MSTDEEAKKKARLARFAPFS

XP_022983965.1 protein MODIFIER OF SNC1 11-like [Cucurbita maxima]4.1e-2752.17Show/hide
Query:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA
        MATDF+ EL    LPG +  +  +LG AAAGNG+VD+ Q  R   +GPS S   TATKEG ES+RA                 KIRR ERFGIPVRLSEA
Subjt:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA

Query:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF
        EKRFS                          RAERFELLTLSM+TDEEAKKKARL RF+PF
Subjt:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF

XP_023527279.1 protein MODIFIER OF SNC1 11-like [Cucurbita pepo subsp. pepo]2.4e-2752.8Show/hide
Query:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA
        MATDFS EL    LPG +  +  +LG AAAGNG+VD+ Q  R   +GPS S   TATKEG ES+RA                 KIRR ERFGIPVRLSEA
Subjt:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA

Query:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF
        EKRFS                          RAERFELLTLSM+TDEEAKKKARL RF+PF
Subjt:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF

TrEMBL top hitse value%identityAlignment
A0A1S3B640 protein MODIFIER OF SNC1 11-like isoform X11.1e-2249.07Show/hide
Query:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA
        MATDF  EL    LPG + T+  D G  AAGNG VD+ Q    S           ATKEGIES+ +                 KIRR ERFGIPVRLSEA
Subjt:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA

Query:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF
        EKRFS                          RAERFELLTLSM+TDEEAKKKARLARFAP+
Subjt:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF

A0A5D3DNB7 Protein MODIFIER OF SNC1 11-like isoform X11.1e-2249.07Show/hide
Query:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA
        MATDF  EL    LPG + T+  D G  AAGNG VD+ Q    S           ATKEGIES+ +                 KIRR ERFGIPVRLSEA
Subjt:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA

Query:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF
        EKRFS                          RAERFELLTLSM+TDEEAKKKARLARFAP+
Subjt:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF

A0A6J1CWP5 protein MODIFIER OF SNC1 11-like isoform X13.2e-2551.55Show/hide
Query:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA
        MATD +AEL        +  +  D GFA AGN  VDR Q  R SD GP SSA L+A KEG++S+RA                 KIRR ERFGIPVRLSEA
Subjt:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA

Query:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF
        EKR+S                          RAERFELLTLSM+TDEEAKKKARLARFAPF
Subjt:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF

A0A6J1F8Q7 protein MODIFIER OF SNC1 11-like7.6e-2751.55Show/hide
Query:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA
        MATDF+ EL    LPG +  +  +LG AAAGNG+VD+ Q  R   +GPS S   TATKEG ES+RA                 KIRR ERFGIPVRLSEA
Subjt:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA

Query:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF
        EKRFS                          RAERFELLTLS++TDEEAKKKARL RF+PF
Subjt:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF

A0A6J1J7D8 protein MODIFIER OF SNC1 11-like2.0e-2752.17Show/hide
Query:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA
        MATDF+ EL    LPG +  +  +LG AAAGNG+VD+ Q  R   +GPS S   TATKEG ES+RA                 KIRR ERFGIPVRLSEA
Subjt:  MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRA----------------DKIRRVERFGIPVRLSEA

Query:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF
        EKRFS                          RAERFELLTLSM+TDEEAKKKARL RF+PF
Subjt:  EKRFS--------------------------RAERFELLTLSMSTDEEAKKKARLARFAPF

SwissProt top hitse value%identityAlignment
Q9LZ08 Protein MODIFIER OF SNC1 111.8e-0440.74Show/hide
Query:  KIRRVERFGIPVRLSEAEKRFSRAERFELLTLSM--------------------------------STDEEAKKKARLARF
        KIRR ERFG+ V+L+E EKR SRAERF  +  ++                                 T+EEAKKKARLARF
Subjt:  KIRRVERFGIPVRLSEAEKRFSRAERFELLTLSM--------------------------------STDEEAKKKARLARF

Arabidopsis top hitse value%identityAlignment
AT5G02770.1 unknown protein1.3e-0540.74Show/hide
Query:  KIRRVERFGIPVRLSEAEKRFSRAERFELLTLSM--------------------------------STDEEAKKKARLARF
        KIRR ERFG+ V+L+E EKR SRAERF  +  ++                                 T+EEAKKKARLARF
Subjt:  KIRRVERFGIPVRLSEAEKRFSRAERFELLTLSM--------------------------------STDEEAKKKARLARF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGATTTCTCAGCAGAACTGAGAGGAAAAATTCTTCCAGGATCGAGACTAACCATACGGCCAGATTTAGGATTCGCAGCCGCTGGTAATGGCAGAGTTGATCG
ACAGCAAGGTTGCCGTTTCTCCGATATCGGGCCTTCCTCTTCAGCTGTTCTCACAGCTACGAAGGAAGGCATTGAATCTAAACGTGCTGACAAGATCCGTCGTGTAGAGC
GGTTCGGGATTCCTGTACGTTTGTCGGAGGCTGAAAAGCGATTCTCTCGAGCTGAGAGATTTGAGCTATTGACTTTGTCTATGTCTACTGACGAGGAGGCAAAGAAGAAA
GCTCGGCTTGCCAGATTTGCTCCATTTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGGATTTCTCAGCAGAACTGAGAGGAAAAATTCTTCCAGGATCGAGACTAACCATACGGCCAGATTTAGGATTCGCAGCCGCTGGTAATGGCAGAGTTGATCG
ACAGCAAGGTTGCCGTTTCTCCGATATCGGGCCTTCCTCTTCAGCTGTTCTCACAGCTACGAAGGAAGGCATTGAATCTAAACGTGCTGACAAGATCCGTCGTGTAGAGC
GGTTCGGGATTCCTGTACGTTTGTCGGAGGCTGAAAAGCGATTCTCTCGAGCTGAGAGATTTGAGCTATTGACTTTGTCTATGTCTACTGACGAGGAGGCAAAGAAGAAA
GCTCGGCTTGCCAGATTTGCTCCATTTTCATAG
Protein sequenceShow/hide protein sequence
MATDFSAELRGKILPGSRLTIRPDLGFAAAGNGRVDRQQGCRFSDIGPSSSAVLTATKEGIESKRADKIRRVERFGIPVRLSEAEKRFSRAERFELLTLSMSTDEEAKKK
ARLARFAPFS