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Carg01039 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01039
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionActin-depolymerizing factor
Genome locationCarg_Chr06:1521617..1523202
RNA-Seq ExpressionCarg01039
SyntenyCarg01039
Gene Ontology termsGO:0030042 - actin filament depolymerization (biological process)
GO:0015629 - actin cytoskeleton (cellular component)
GO:0003779 - actin binding (molecular function)
InterPro domainsIPR002108 - Actin-depolymerising factor homology domain
IPR017904 - ADF/Cofilin
IPR029006 - ADF-H/Gelsolin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027962.1 Actin-depolymerizing factor 2, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-32100Show/hide
Query:  MLNVHVANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRG
        MLNVHVANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRG
Subjt:  MLNVHVANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRG

XP_022945978.1 actin-depolymerizing factor 1-like isoform X1 [Cucurbita moschata]4.4e-2797.06Show/hide
Query:  VANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        +A ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
Subjt:  VANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

XP_022945981.1 actin-depolymerizing factor 2-like isoform X2 [Cucurbita moschata]1.3e-26100Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

XP_022971269.1 actin-depolymerizing factor 1-like isoform X1 [Cucurbita maxima]9.7e-2795.59Show/hide
Query:  VANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ++ ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
Subjt:  VANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

XP_023540241.1 actin-depolymerizing factor 1-like isoform X1 [Cucurbita pepo subsp. pepo]4.4e-2797.06Show/hide
Query:  VANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        +A ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
Subjt:  VANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

TrEMBL top hitse value%identityAlignment
A0A6J1G2E2 actin-depolymerizing factor 2-like isoform X26.1e-27100Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

A0A6J1G2I6 actin-depolymerizing factor 1-like isoform X12.1e-2797.06Show/hide
Query:  VANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        +A ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
Subjt:  VANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

A0A6J1J833 actin-depolymerizing factor 2-like1.5e-2595.38Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASG+AVNDDCKLKFL LKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLP+DECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

A0A6J1KUA9 actin-depolymerizing factor 1-like isoform X14.7e-2795.59Show/hide
Query:  VANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ++ ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
Subjt:  VANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

A0A6J1L3B8 actin-depolymerizing factor 2-like isoform X26.1e-27100Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

SwissProt top hitse value%identityAlignment
Q0DLA3 Actin-depolymerizing factor 75.2e-2378.46Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAV+D+CKLKFL LKAKRTYRFI++KI+EK+K VVVEKVGEP  +Y+DFAASLP++ECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

Q39250 Actin-depolymerizing factor 12.8e-2483.08Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAV+DDCKL+FL LKAKRT+RFIV+KIEEKQKQVVVEKVG+P Q+YE+FAA LP+DECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

Q9FVI1 Actin-depolymerizing factor 21.5e-2584.62Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAV+DDCKLKFL LKAKRTYRFI++KIEEKQK+VVVEK+GEPT+SYEDF A LP+DECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

Q9FVI2 Actin-depolymerizing factor 11.5e-2586.15Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAV+DDCKL+FL LKAKRT+RFIV+KIEEKQKQVVVEK+GEPT+SYEDFAASLP +ECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

Q9ZSK3 Actin-depolymerizing factor 49.5e-2584.62Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAV+DDCKL+FL LKAKRT+RFIV+KIEEKQKQV+VEKVGEP  +YEDFAASLP+DECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

Arabidopsis top hitse value%identityAlignment
AT3G46010.1 actin depolymerizing factor 12.0e-2583.08Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAV+DDCKL+FL LKAKRT+RFIV+KIEEKQKQVVVEKVG+P Q+YE+FAA LP+DECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

AT3G46010.2 actin depolymerizing factor 11.5e-2581.82Show/hide
Query:  NANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        +ANAASGMAV+DDCKL+FL LKAKRT+RFIV+KIEEKQKQVVVEKVG+P Q+YE+FAA LP+DECR
Subjt:  NANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

AT5G59880.1 actin depolymerizing factor 36.3e-2476.92Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAV+DDCKLKF+ LK KRT+RFI++KIEE QKQV+VEK+GEP Q++ED AASLP+DECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

AT5G59880.2 actin depolymerizing factor 36.3e-2476.92Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAV+DDCKLKF+ LK KRT+RFI++KIEE QKQV+VEK+GEP Q++ED AASLP+DECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR

AT5G59890.1 actin depolymerizing factor 46.7e-2684.62Show/hide
Query:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR
        ANAASGMAV+DDCKL+FL LKAKRT+RFIV+KIEEKQKQV+VEKVGEP  +YEDFAASLP+DECR
Subjt:  ANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATGTACACGTGGCGAATGCCAATGCAGCATCGGGAATGGCTGTGAATGATGATTGCAAACTGAAGTTTTTGGCGCTCAAGGCCAAAAGAACATATCGCTTTAT
TGTGTTTAAGATTGAGGAGAAGCAAAAGCAAGTTGTAGTAGAGAAAGTTGGCGAGCCAACTCAAAGTTACGAGGACTTTGCTGCAAGCCTTCCTTCGGATGAATGTCGTG
GTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATGTACACGTGGCGAATGCCAATGCAGCATCGGGAATGGCTGTGAATGATGATTGCAAACTGAAGTTTTTGGCGCTCAAGGCCAAAAGAACATATCGCTTTAT
TGTGTTTAAGATTGAGGAGAAGCAAAAGCAAGTTGTAGTAGAGAAAGTTGGCGAGCCAACTCAAAGTTACGAGGACTTTGCTGCAAGCCTTCCTTCGGATGAATGTCGTG
GTTGA
Protein sequenceShow/hide protein sequence
MLNVHVANANAASGMAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRG