CuGenDBv2

Gene ID	Carg01082
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Tubulin beta chain
Genome location	Carg_Chr06:1307736..1309743
RNA-Seq Expression	Carg01082
Synteny	Carg01082
Gene Ontology terms	GO:0000226 - microtubule cytoskeleton organization (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005874 - microtubule (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005200 - structural constituent of cytoskeleton (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR000217 - Tubulin IPR002453 - Beta tubulin IPR003008 - Tubulin/FtsZ, GTPase domain IPR013838 - Beta tubulin, autoregulation binding site IPR036525 - Tubulin/FtsZ, GTPase domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7027919.1 Tubulin beta-8 chain, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.6e-79

100

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQVSVPSATHM
        WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQVSVPSATHM
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQVSVPSATHM

QFZ79247.1 tubulin beta chain-like protein [Luffa aegyptiaca]

4.0e-69

94.81

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKY G SDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

XP_022934786.1 tubulin beta chain-like [Cucurbita moschata]

4.0e-69

94.81

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKY G SDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

XP_022937309.1 tubulin beta chain-like [Cucurbita moschata]

1.6e-70

96.3

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

XP_022983477.1 tubulin beta chain-like [Cucurbita maxima]

4.0e-69

94.81

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKY G SDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

TrEMBL top hits

e value

%identity

Alignment

A0A5Q0LRR7 Tubulin beta chain

1.9e-69

94.81

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKY G SDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

A0A6J1F2T1 Tubulin beta chain

1.9e-69

94.81

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKY G SDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

A0A6J1FAT6 Tubulin beta chain

7.9e-71

96.3

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

A0A6J1I6I9 Tubulin beta chain

7.9e-71

96.3

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

A0A6J1IZE9 Tubulin beta chain

1.9e-69

94.81

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKY G SDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

SwissProt top hits

e value

%identity

Alignment

P29516 Tubulin beta-8 chain

1.9e-69

88.89

Show/hide

Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDS G+Y G +DLQL+R+NVYYNEASCGRFVPRAVLMDLEPG MDS+RSGPYGQ+FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

P37392 Tubulin beta-1 chain

5.4e-69

88.15

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDS G+Y G ++LQL+R+NVYYNEASCGRFVPRAVLMDLEPG MDS+RSGPYGQ+FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

Q56YW9 Tubulin beta-2 chain

7.1e-69

89.63

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGID  G+Y G SDLQL+RINVYYNEASCGRFVPRAVLMDLEPG MDS+RSGPYGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

Q6VAF4 Tubulin beta-9 chain

1.9e-69

89.63

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDS G+Y G S+LQL+RINVYYNEASCGRFVPRAVLMDLEPG MDS+RSGPYGQ+FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

Q9ZPN9 Tubulin beta-2 chain

7.1e-69

88.15

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVC EHGID  G+Y GTSDLQL+R+NVYYNEASCGRFVPRAVLMDLEPG MDS+R+GPYGQ+FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

Arabidopsis top hits

e value

%identity

Alignment

AT5G12250.1 beta-6 tubulin

6.2e-68

84.44

Show/hide

Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIG+KFWEVVC EHGID  G+Y G SDLQL+R+NVYYNEASCGR+VPRA+LMDLEPG MDS+R+GPYGQ+FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELID+VLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

AT5G23860.1 tubulin beta 8

1.3e-70

88.89

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDS G+Y G +DLQL+R+NVYYNEASCGRFVPRAVLMDLEPG MDS+RSGPYGQ+FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

AT5G23860.2 tubulin beta 8

1.3e-70

88.89

Show/hide

Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGIDS G+Y G +DLQL+R+NVYYNEASCGRFVPRAVLMDLEPG MDS+RSGPYGQ+FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

AT5G62690.1 tubulin beta chain 2

5.0e-70

89.63

Show/hide

Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGID  G+Y G SDLQL+RINVYYNEASCGRFVPRAVLMDLEPG MDS+RSGPYGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

AT5G62700.1 tubulin beta chain 3

5.0e-70

89.63

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Query:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGAKFWEVVCAEHGID  G+Y G SDLQL+RINVYYNEASCGRFVPRAVLMDLEPG MDS+RSGPYGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV
        WAKGHYTEGAELIDSVLDVVRKEAENCD     QV
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDKKSSGQV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGTGAGATTCTTCACATCCAAGGAGGCCAATGCGGCAACCAGATCGGTGCCAAGTTCTGGGAGGTCGTTTGTGCTGAGCATGGAATCGATTCCATTGGTAAGTACAA
TGGTACTTCCGATCTACAACTTGACCGGATTAATGTTTACTATAATGAAGCTAGTTGCGGGAGATTTGTTCCTCGCGCGGTGCTTATGGATCTTGAGCCTGGTGTTATGG
ATAGTATCAGATCTGGACCTTACGGTCAGGTTTTCAGGCCTGATAACTTCGTTTTTGGTCAGTCTGGTGCCGGTAATAACTGGGCTAAAGGACATTATACCGAAGGTGCA
GAGCTTATTGATTCCGTCCTTGATGTCGTTCGCAAGGAGGCTGAGAACTGTGACAAAAAAAGCAGTGGACAAGTGTCGGTCCCTTCTGCAACGCACATGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSIGKYNGTSDLQLDRINVYYNEASCGRFVPRAVLMDLEPGVMDSIRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGA
ELIDSVLDVVRKEAENCDKKSSGQVSVPSATHM

Carg01082 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome