CuGenDBv2

Gene ID	Carg01137
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP-dependent helicase/deoxyribonuclease subunit B
Genome location	Carg_Chr06:1032697..1039335
RNA-Seq Expression	Carg01137
Synteny	Carg01137
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0009555 - pollen development (biological process) GO:0005886 - plasma membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6596313.1 hypothetical protein SDJN03_09493, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-121

99.54

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Query:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL FILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_004137681.1 uncharacterized protein LOC101203220 [Cucumis sativus]

2.4e-113

91.28

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Query:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        A+VPMIDVHLRYSGSDLHGVTAKV+DMPHIY+D+HPHIS+QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L+FILS+YILQSSK+KLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_022933336.1 uncharacterized protein LOC111440559 [Cucurbita moschata]

1.1e-121

99.54

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Query:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIP FLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_022971506.1 uncharacterized protein LOC111470204 [Cucurbita maxima]

4.8e-122

99.54

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Query:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL+LTFILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_023541018.1 uncharacterized protein LOC111801222 [Cucurbita pepo subsp. pepo]

2.8e-122

100

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Query:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9R0 Uncharacterized protein

1.1e-113

91.28

Show/hide

Query:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        A+VPMIDVHLRYSGSDLHGVTAKV+DMPHIY+D+HPHIS+QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L+FILS+YILQSSK+KLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A1S3B641 uncharacterized protein LOC103486235 isoform X2

5.7e-113

91.74

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Query:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        A+VPMIDVHLRYSGSDLHGVTAKV+DMPHIY D+HPHI++QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L+FILSIYILQSSK+KLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A5A7TLX6 Uncharacterized protein

5.7e-113

91.74

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Query:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        A+VPMIDVHLRYSGSDLHGVTAKV+DMPHIY D+HPHI++QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L+FILSIYILQSSK+KLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A6J1EYS2 uncharacterized protein LOC111440559

5.1e-122

99.54

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Query:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIP FLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A6J1I3H9 uncharacterized protein LOC111470204

2.3e-122

99.54

Show/hide

Query:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL+LTFILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G51610.1 unknown protein

6.7e-90

75.71

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Query:  FLLLLVSLFSLIPTFL--AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQV
        F+  LV L SL   FL  AYRPGDIV MSKMGQYHSSRT WHD+IG+HCPIF VNREVL+PI KP+GYTG DPYKI FQVG EKFL+ WLLVINRKS++V
Subjt:  FLLLLVSLFSLIPTFL--AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQV

Query:  PMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFVRET
        PMIDV+LRYSG DL GVTA+V+DMPH YL++HP I +QFWD QHWPKH+LVRYTW+EQSEIDV+SG YVLFGS L  +F+LSIY+LQSS+EKLARFVRET
Subjt:  PMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFVRET

Query:  VVESSIPGVG
        VVESS   VG
Subjt:  VVESSIPGVG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAGAACCTCCATTTCTGTTGCTCCTAGTTTCGCTATTCTCGCTGATTCCGACTTTTCTGGCTTACAGGCCTGGAGACATCGTTCCGATGAGTAAGATGGGGCAGTA
TCACTCGTCGAGAACAGTTTGGCACGATATGATTGGTCGACATTGTCCAATTTTCGGCGTCAATCGCGAGGTTTTGGTTCCAATACCGAAGCCGGTCGGCTACACAGGAG
CTGATCCGTATAAAATATCCTTTCAAGTTGGAAAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATCAATCGCAAAAGTGCACAAGTCCCAATGATTGATGTCCACTTG
AGGTACTCTGGAAGTGATCTTCATGGTGTGACTGCCAAAGTAATGGATATGCCTCATATCTATCTTGATTCGCATCCACATATTAGCCAACAATTCTGGGATCAACAGCA
TTGGCCAAAGCATATCCTTGTCCGTTATACATGGGAGGAGCAATCGGAGATTGACGTGACTTCCGGATTATATGTTTTGTTCGGATCAGGTCTGTTGCTGACTTTTATTC
TGTCAATTTACATATTGCAATCATCGAAGGAGAAGTTAGCAAGGTTTGTAAGAGAAACAGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTTGAATAG

mRNA sequence

Show/hide mRNA sequence

AATCCAAAAGCGGGAGAAGAGGCAAGCGATTCTATAGAGTTGAGGTTCTTCGAACAATTAGGCAAATCACCGTCGACGATGGGAGAACCTCCATTTCTGTTGCTCCTAGT
TTCGCTATTCTCGCTGATTCCGACTTTTCTGGCTTACAGGCCTGGAGACATCGTTCCGATGAGTAAGATGGGGCAGTATCACTCGTCGAGAACAGTTTGGCACGATATGA
TTGGTCGACATTGTCCAATTTTCGGCGTCAATCGCGAGGTTTTGGTTCCAATACCGAAGCCGGTCGGCTACACAGGAGCTGATCCGTATAAAATATCCTTTCAAGTTGGA
AAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATCAATCGCAAAAGTGCACAAGTCCCAATGATTGATGTCCACTTGAGGTACTCTGGAAGTGATCTTCATGGTGTGAC
TGCCAAAGTAATGGATATGCCTCATATCTATCTTGATTCGCATCCACATATTAGCCAACAATTCTGGGATCAACAGCATTGGCCAAAGCATATCCTTGTCCGTTATACAT
GGGAGGAGCAATCGGAGATTGACGTGACTTCCGGATTATATGTTTTGTTCGGATCAGGTCTGTTGCTGACTTTTATTCTGTCAATTTACATATTGCAATCATCGAAGGAG
AAGTTAGCAAGGTTTGTAAGAGAAACAGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTTGAATAGACTCACTCTACAACTTTACGACTCTACAACTCTAC
GACTCTACAACTCACTCCCTCTTACTCCTTAGGGTTAGGCTCCATTACGTCCATTCAAGGAAGCTCAATTACAATCACTCTATCAGATTTCACATTTCTTTTGAACTCAA
AAATGTAACTCTTTATTTTATCAGTATGGTAAGGTGTATATGCAACTCGGAAGACAATTACAGAGACCCTTGTTTTCATTTTCTAGGTCGGGAGAGAATCTTTCTTTTGT
ACATGAGACTAGACTAGTTGCGTAATTGCCTGCTATTGTAGGCTTCTATACTTTCTACTTTCTGTCTCCATAACTGTCATCTCCCTTGGAAACTTCTAGAGTATTTTATA
TTATTCACAGTTCCCACTTTCTAATTCTTTGACTGCACATAGAAAGTTAATTTAGG

Protein sequence

Show/hide protein sequence

MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHL
RYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE

Carg01137 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome