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Carg01140 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01140
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L35
Genome locationCarg_Chr06:1014619..1015433
RNA-Seq ExpressionCarg01140
SyntenyCarg01140
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650972.1 hypothetical protein Csa_002588 [Cucumis sativus]1.3e-3551.04Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
        MA+GHRRS+KI+V AK+ NLYIK KAT+K PSGKF+ LL LDKLL  +DSKS SRIL+Q+ RTLKSR++SFVKKH   RRSK          +   E+ Y
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAV--LSLLLLEIDRFLELVDLEQF
        +SW +   E  C A FGVGLGY++        +    I PS SS + V L +FVL   K K+LWAML+ +    LLL ++D F+ L+ L QF
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAV--LSLLLLEIDRFLELVDLEQF

KAG6596309.1 hypothetical protein SDJN03_09489, partial [Cucurbita argyrosperma subsp. sororia]1.5e-9598.95Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
        MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELVDLEQFW
        QSWRLSRAESSCAAVFGVGLGYLLAEFGASATV+RVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAML+AVLSLLLLEIDRFLELVDLEQFW
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELVDLEQFW

KAG7027863.1 hypothetical protein SDJN02_09040 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-96100Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
        MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELVDLEQFW
        QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELVDLEQFW
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELVDLEQFW

XP_023540743.1 uncharacterized protein LOC111801019 [Cucurbita pepo subsp. pepo]8.2e-9496.86Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
        MALGHRRSWKITVHAKVN+LYIKFKATVKRPSGKFRSLLNLDKLL GLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELVDLEQFW
        QSWRL RAESSCAAVFGVGLGYLLAEFGASA VKRVGIIPSLSSFLLVC+VLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLEL+DLEQFW
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELVDLEQFW

XP_038906422.1 uncharacterized protein LOC120092221 [Benincasa hispida]4.6e-3654.77Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
        MALG RRS+KITVHAK+ NLYIK KAT+K PSGK + LL LDKLL G DSKSES ILVQ+ RTLKSR++SFVKKH    RS      KMP      E+E 
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY

Query:  QSWRLSRAESSCAAVFGVGLGYLLA---EFGASATVKRVGIIPSLSS--FLLVCLVLFVLLFHKSK--FLWAM--LMAVLSLLLLEIDRFLELVDLEQF
        QSW + R E  C A FGVGLGYLLA     G +  +      PS SS  ++ +CL+LFVL  HK K  +LWA+  L+A+L L LL++D+F+ L+ L  F
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLA---EFGASATVKRVGIIPSLSS--FLLVCLVLFVLLFHKSK--FLWAM--LMAVLSLLLLEIDRFLELVDLEQF

TrEMBL top hitse value%identityAlignment
A0A0A0LCL9 50S ribosomal protein L352.9e-2852.67Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
        MA+GHRRS+KI+V AK+ NLYIK KAT+K PSGKF+ LL LDKLL  +DSKS SRIL+Q+ RTLKSR++SFVKKH   RRSK          +   E+ Y
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCL
        +SW +   E  C A FGVGLGY++        +    I PS SS + V L
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCL

A0A1R3KWS9 Uncharacterized protein (Fragment)2.2e-0439.58Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGK---FRSLLNLDKLLAGLDSKSESRILV--QQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPD
        M +G +R WK ++ AK      K KAT   P+ K   F  LL L+K +  L  KS S I V  QQ RTLKSR + F++K  R RR++  +  + P+
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGK---FRSLLNLDKLLAGLDSKSESRILV--QQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPD

A0A1S3B4Y8 uncharacterized protein LOC1034862291.5e-3250.26Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
        MA+GHRRS+KI+VHAK+ NLYIK KAT+K PSGKF+ LL LDKLL  +DSKSESR+LVQ+ RTLKSR++SFVKKH  R RSK         P+   E++Y
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAV--LSLLLLEIDRFLELVDLEQFW
        QSW +           GVG GYL+A          VG   S SS + V L +FV+   K K+LWA+L+ V    LLL ++D F+ L+ L  F+
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAV--LSLLLLEIDRFLELVDLEQFW

A0A5A7TM08 RING-H2 finger protein ATL74-like1.3e-2557.6Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY
        MA+GHRRS+KI+VHAK+ NLYIK KAT+K PSGKF+ LL LDKLL  +DSKSESR+LVQ+ RTLKSR++SFVKKH  R RSK         P+   E++Y
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEY

Query:  QSWRLSRAESSCAAVFGVGLGYLLA
        Q W +           GVG GYL+A
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLA

A0A5D3DNQ2 50S ribosomal protein L355.1e-2558.2Show/hide
Query:  GHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEYQSW
        GHRRS+KI+VHAK+ NLYIK KAT+K PSGKF+ LL LDKLL  +DSKSESR+LVQ+ RTLKSR++SFVKKH  R RSK         P+   E++YQSW
Subjt:  GHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEYQSW

Query:  RLSRAESSCAAVFGVGLGYLLA
         +           GVG GYL+A
Subjt:  RLSRAESSCAAVFGVGLGYLLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTAGGTCACCGGCGGTCATGGAAAATCACGGTACATGCGAAGGTGAACAACCTTTATATCAAGTTCAAGGCCACCGTGAAACGTCCGTCGGGAAAATTCCGAAG
CCTTCTTAATCTGGATAAATTACTCGCCGGACTGGATTCCAAATCGGAGTCTCGGATCCTCGTTCAACAGCATCGGACTTTGAAATCCCGAATTATCAGCTTCGTAAAGA
AACATTTCCGGCGTCGCCGATCGAAAACCGGTGTTGGCTTCAAAATGCCGGATCCATACCTAGTCGATGAAACTGAATATCAATCTTGGCGTTTGAGCCGCGCGGAATCA
AGTTGCGCGGCTGTTTTTGGTGTCGGATTGGGTTATTTGCTTGCGGAATTTGGCGCCAGCGCCACAGTGAAGAGAGTCGGTATCATTCCTAGCTTGAGTTCCTTTTTACT
TGTGTGCCTTGTTTTATTTGTTTTATTGTTCCACAAATCCAAGTTTCTTTGGGCAATGCTAATGGCTGTGCTTTCTCTTTTACTGTTAGAAATTGATAGATTTCTGGAAC
TTGTAGATTTAGAGCAATTTTGGTAA
mRNA sequenceShow/hide mRNA sequence
TATCGTGCTTCGCTTTCTTCAGTCGTGGAAGTGGCAGTGGCAGTGGCAGTGGCTGTGTCGTTGCAATGGCGTTAGGTCACCGGCGGTCATGGAAAATCACGGTACATGCG
AAGGTGAACAACCTTTATATCAAGTTCAAGGCCACCGTGAAACGTCCGTCGGGAAAATTCCGAAGCCTTCTTAATCTGGATAAATTACTCGCCGGACTGGATTCCAAATC
GGAGTCTCGGATCCTCGTTCAACAGCATCGGACTTTGAAATCCCGAATTATCAGCTTCGTAAAGAAACATTTCCGGCGTCGCCGATCGAAAACCGGTGTTGGCTTCAAAA
TGCCGGATCCATACCTAGTCGATGAAACTGAATATCAATCTTGGCGTTTGAGCCGCGCGGAATCAAGTTGCGCGGCTGTTTTTGGTGTCGGATTGGGTTATTTGCTTGCG
GAATTTGGCGCCAGCGCCACAGTGAAGAGAGTCGGTATCATTCCTAGCTTGAGTTCCTTTTTACTTGTGTGCCTTGTTTTATTTGTTTTATTGTTCCACAAATCCAAGTT
TCTTTGGGCAATGCTAATGGCTGTGCTTTCTCTTTTACTGTTAGAAATTGATAGATTTCTGGAACTTGTAGATTTAGAGCAATTTTGGTAACATTTTTTTTTTTGTTCTT
TCTTCCTCTTCTCAGATCTTCGTTTTTTTTTTTTTACAAATAAACATATAATTATAAATATAAGTTTGGGAATTATTCGA
Protein sequenceShow/hide protein sequence
MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEYQSWRLSRAES
SCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELVDLEQFW