; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg01239 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01239
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionBasic helix-loop-helix transcription factor
Genome locationCarg_Chr06:450901..454255
RNA-Seq ExpressionCarg01239
SyntenyCarg01239
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR024097 - Basic helix-loop-helix leucine zipper transcription factor
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596223.1 Transcription factor basic helix-loop-helix 60, partial [Cucurbita argyrosperma subsp. sororia]1.7e-66100Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
        VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
Subjt:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS

KAG7027766.1 Transcription factor bHLH48 [Cucurbita argyrosperma subsp. argyrosperma]5.9e-67100Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANSV
        VNQLAGARDEHNLHTFSTPENSLLSYDSSANSV
Subjt:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANSV

XP_022931797.1 transcription factor bHLH48-like [Cucurbita moschata]2.3e-6699.24Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEP+HESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
        VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
Subjt:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS

XP_023527110.1 transcription factor bHLH48-like [Cucurbita pepo subsp. pepo]4.0e-5588.64Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPI ESN P+MV PLMW EI  +G+RQQYQQQWHFDAA 
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
        VNQ A A DEHN H FSTPENSLLSYDSSANS
Subjt:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS

XP_023538801.1 transcription factor bHLH48-like [Cucurbita pepo subsp. pepo]2.9e-6698.48Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEP+HESNLPTM+TPLMWSEISPSGSRQQYQQQWHFDAAV
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
        VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
Subjt:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS

TrEMBL top hitse value%identityAlignment
A0A5D3DPK9 Transcription factor bHLH484.0e-5384.85Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNI+SILA ENEPI ESN PTMV+PLMW EI  +G+RQQYQ QWHFD + 
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
        VNQ   ARDEHN H FS PENSLLSYDSSANS
Subjt:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS

A0A6J1DL95 transcription factor bHLH48-like8.1e-5487.22Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQ-QWHFDAA
        MKLLQELVPGC+KISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEP+ ES+ P+MVTPLMW EI  SG+RQQYQQ QWHFDAA
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQ-QWHFDAA

Query:  VVNQLAGARDEHNLHTFSTPENSLLSYDSSANS
         VNQ A  RDEHN H FSTPENSLLSYDSSANS
Subjt:  VVNQLAGARDEHNLHTFSTPENSLLSYDSSANS

A0A6J1EUQ6 transcription factor bHLH48-like1.1e-6699.24Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEP+HESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
        VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
Subjt:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS

A0A6J1F3F3 transcription factor bHLH48-like5.6e-5587.88Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPI ESN P+MV PLMW EI  +G+RQQYQQQWHFDAA 
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
        VNQ A   DEHN H FSTPENSLLSYDSSANS
Subjt:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS

A0A6J1J6J4 transcription factor bHLH481.3e-5487.88Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPI ESN P+MV PLMW EI  SG+RQQYQ QWHFD A 
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS
        VNQ A A DEHN H FSTPENSLLSYDSSANS
Subjt:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANS

SwissProt top hitse value%identityAlignment
Q3EAI1 Transcription factor bHLH603.3e-2041.42Show/hide
Query:  MKLLQELVPGCNK-----------------------------------------------ISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNI
        MKLLQELVPGC+K                                               I GTALVLDEIINHVQSLQRQVE LSMRLAAVNPR+DFN+
Subjt:  MKLLQELVPGCNK-----------------------------------------------ISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNI

Query:  DSILAAENEPIHESNLPTMVTPLMWS----EISPSGSRQQYQ----QQWHFDAAVVNQLAGARDEHNLH
        D+ILA+EN  + + +       L W     E   S   +Q Q    QQW FD   +NQ    R+E   H
Subjt:  DSILAAENEPIHESNLPTMVTPLMWS----EISPSGSRQQYQ----QQWHFDAAVVNQLAGARDEHNLH

Q6NKN9 Transcription factor bHLH748.2e-1963.89Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTM
        M+LLQELVPGCNKI+G A++LDEIIN+VQSLQ+QVEFLSM+LA VNP ++ +ID ILA +     + N PT+
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTM

Q8VZ02 Transcription factor bHLH486.5e-2453.85Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGC+KI GTALVLDEIINHVQ+LQRQVE LSMRLAAVNPR+DFN+DSILA+EN  + + +               +       QQW FD   
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFS
          +  G  ++H+   FS
Subjt:  VNQLAGARDEHNLHTFS

Q9CAA9 Transcription factor bHLH492.4e-1870Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAE
        MK LQ+LVPGCNK++G A++LDEIIN+VQSLQRQVEFLSM+LA VNP++DFN++ +LA +
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAE

Q9SRT2 Transcription factor bHLH625.3e-1843.61Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQ+LVPGCNK++G AL+LDEIIN+VQSLQRQVEFLSM+L++VN R+DFN+D++L+ +  P                    S +   +QQ    D++ 
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANSV
           L    D HN       +N  L+ D S+N+V
Subjt:  VNQLAGARDEHNLHTFSTPENSLLSYDSSANSV

Arabidopsis top hitse value%identityAlignment
AT1G10120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.8e-2063.89Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTM
        M+LLQELVPGCNKI+G A++LDEIIN+VQSLQ+QVEFLSM+LA VNP ++ +ID ILA +     + N PT+
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTM

AT1G68920.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.7e-1970Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAE
        MK LQ+LVPGCNK++G A++LDEIIN+VQSLQRQVEFLSM+LA VNP++DFN++ +LA +
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAE

AT2G42300.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.6e-2553.85Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV
        MKLLQELVPGC+KI GTALVLDEIINHVQ+LQRQVE LSMRLAAVNPR+DFN+DSILA+EN  + + +               +       QQW FD   
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAV

Query:  VNQLAGARDEHNLHTFS
          +  G  ++H+   FS
Subjt:  VNQLAGARDEHNLHTFS

AT3G57800.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.4e-2141.42Show/hide
Query:  MKLLQELVPGCNK-----------------------------------------------ISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNI
        MKLLQELVPGC+K                                               I GTALVLDEIINHVQSLQRQVE LSMRLAAVNPR+DFN+
Subjt:  MKLLQELVPGCNK-----------------------------------------------ISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNI

Query:  DSILAAENEPIHESNLPTMVTPLMWS----EISPSGSRQQYQ----QQWHFDAAVVNQLAGARDEHNLH
        D+ILA+EN  + + +       L W     E   S   +Q Q    QQW FD   +NQ    R+E   H
Subjt:  DSILAAENEPIHESNLPTMVTPLMWS----EISPSGSRQQYQ----QQWHFDAAVVNQLAGARDEHNLH

AT3G57800.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.4e-2857.38Show/hide
Query:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWS----EISPSGSRQQYQ----Q
        MKLLQELVPGC+KI GTALVLDEIINHVQSLQRQVE LSMRLAAVNPR+DFN+D+ILA+EN  + + +       L W     E   S   +Q Q    Q
Subjt:  MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWS----EISPSGSRQQYQ----Q

Query:  QWHFDAAVVNQLAGARDEHNLH
        QW FD   +NQ    R+E   H
Subjt:  QWHFDAAVVNQLAGARDEHNLH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCTCTAGTGTTGGATGAAATCATCAACCATGTACAATCGCTGCAGCGTCAAGTGGAGTT
CTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCCATACACGAAAGCAACCTTCCAACCATGGTTA
CGCCATTGATGTGGTCAGAAATCTCCCCAAGTGGAAGCAGACAACAATATCAACAGCAATGGCATTTTGATGCAGCAGTAGTTAACCAGCTAGCCGGGGCGAGGGACGAG
CATAACCTTCATACTTTCAGCACTCCTGAAAACTCTCTTTTAAGTTACGACTCTTCAGCAAATTCAGTATAA
mRNA sequenceShow/hide mRNA sequence
TCAGAGGAAGAACTGTTGAGGGTAAAATCCGTAGAAACCATTTTCTCTCTGATTCTTTTTCTCTGATTCTTTTTCTCTGATCTTTGTAAACAAAACTCCGTTTTGCGTAT
AATTATGCACTCCAAGTTGAACGGTACCATCAAGCAACGTTGCTTTCGCCATACTTCAAATGGGTTCCAGAAGTAATCTCGACTGATTATTAAGAGGAAGAAGAAGGTAG
ATTGGCTGCCATTGAAGATAGTTTCCTTTTACTTCATACCCACATTTTGTTTCTGTTTCTCTTTCATTCACCTCCATTTCCCCTCTGATTGATCGATTAGCTCTGTAATC
CCACATTTGAGGAGCTGGGTTTTGCTCCGAATTTGGTGAAGGTGAAGGGGAATTTGTGTAGTTTGTGTACTGTAAATTGGAATTGAAGTGGGATCATGTTTTGGTGGATC
CTAAGTCCCATCGGCGTCTTTCAATTTACACTGACGTGAATCGCAACTCAATTCTGTGACGAGACAGAAATTCAAATGGGCGGTTGGATGACGATTCTCGTACGGAAATT
AACTCGACTAGGCTCCTCACGTGTGCGCATTCTTGATCCTTTCCGGCAACGCAGGCTTTAGAGCTTCTCCACTCGCCGGATTCCGCGGAGGTTAAGAAGGATGATTCCGT
TCACTACCGTGTCAAAGACGTTCCGAAACCCTACTTCAGTGCCTTAAATTGCAATTTGACCTTCCCGACGAACTCGCCTCTAAACGAACACGACGCCAAATTCTCTGTCG
TGGCTGAAGAACACTCGCCGGAGACGACGAGTTCAGTGCCGTTGAATTCGAGCGTCAGTTTGGAGAAAGTGAAGAACGAGCCCACCATTGAAACCGATTCGAACCCTAAT
CACTTGTATCCGAAAATCTCCGACCCGACGGTGGAGAACAACACGAATCAGAGATCGGTGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCATCAAAGAAGAGCAA
GAACGAGAGCCAGGAAGATGCAGAGAAGCTCCCGTACGTTCATGTCCGAGCCGGCCGTGGTCAAGCGACAGACAAACATAGCCTAGCAGAGCGAGCAAGGAGAGAGAAAA
TCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCTCTAGTGTTGGATGAAATCATCAACCATGTACAATCGCTGCAGCGT
CAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCCATACACGAAAGCAACCTTCC
AACCATGGTTACGCCATTGATGTGGTCAGAAATCTCCCCAAGTGGAAGCAGACAACAATATCAACAGCAATGGCATTTTGATGCAGCAGTAGTTAACCAGCTAGCCGGGG
CGAGGGACGAGCATAACCTTCATACTTTCAGCACTCCTGAAAACTCTCTTTTAAGTTACGACTCTTCAGCAAATTCAGTATAAACTTCTTACTCCCTAAAATCAGTTGAA
GATGGAGGCAGGAAGGCGGCATTATATTTTAACTGTAGGTAGCAGCAGTGTATATAGGGGGAAATATATTAATAGTGATAGGAGTAAGCAGAGAAGTAGAGAATCTGCCT
CCACGTTCAACTGGGTGTTCAAGGCGACGAAGAAGACGACGAAGAAGACGAA
Protein sequenceShow/hide protein sequence
MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPIHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAVVNQLAGARDE
HNLHTFSTPENSLLSYDSSANSV