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Carg01243 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01243
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionArabinogalactan peptide 23
Genome locationCarg_Chr06:440374..440660
RNA-Seq ExpressionCarg01243
SyntenyCarg01243
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043704.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa]2.3e-0668.85Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL
        M MKKVTCA+L AAA VSA +A++E PA AP  SSD A AA+PAVGAFIGAS+ + FAYYL
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL

KAG6596222.1 putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]5.9e-1590.16Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL
        MA+ K+TCALLFAAATV+AVVAS EAPALAPGPSSDAAAAAVPAVGAFIGASVA+LFAYYL
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL

KAG7027762.1 hypothetical protein SDJN02_08939, partial [Cucurbita argyrosperma subsp. argyrosperma]6.5e-22100Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYLETCKGF
        MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYLETCKGF
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYLETCKGF

KAG7027763.1 putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-1184.48Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFA
        MA+ K+TCALLFAAATV+AVVAS EAPALAPGPSSDAAAAAVPAVGAFIGASVA+  +
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFA

XP_038906349.1 arabinogalactan protein 23 [Benincasa hispida]3.7e-0973.77Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL
        M MKKVTCA+L +AA +SA +AS E PA APG SSDAAAAA+PAVGAFIGAS+A+ FAYYL
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL

TrEMBL top hitse value%identityAlignment
A0A4P1RCA0 Uncharacterized protein1.4e-0665.57Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL
        M MKKV CA+LFAAA++SAV A+AEAPA APGPSS AA      VG+F+GASV ++ AYYL
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL

A0A5D3DQ83 Arabinogalactan peptide 231.1e-0668.85Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL
        M MKKVTCA+L AAA VSA +A++E PA AP  SSD A AA+PAVGAFIGAS+ + FAYYL
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL

A0A6J1J6Y9 arabinogalactan peptide 23-like5.4e-0666.13Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYLE
        M MKK+ CA+LFAAATVSAVVA  EA A APGPSS  AAA +PA+G+ IGAS+ ++ AYYL+
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYLE

A0A6P5Z0H7 arabinogalactan peptide 23-like1.4e-0654.84Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYLE
        M MKK++CA++ AAA++SAV+AS +APA APGP+S AA+A +P +G+ +GAS+ + FAY+L+
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYLE

A0A6P6APJ2 arabinogalactan peptide 23-like3.2e-0653.23Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYLE
        M MKK++CA++  AA++SAV+AS +APA APGP+S AA++ +P +G+ +GAS+ + FAYYL+
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYLE

SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 232.1e-0757.38Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL
        M MKK+ C +LFAAA+++AV+A+ E  A APGP+S AA+AA+PA+G+ +GAS+ +LF+YYL
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL

Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)3.4e-0855.74Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL
        M MKK+ C ++FAAA+++AV+A AE  A APGP++  A+ AVPA+G+ +GAS+ +LFAYYL
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL

AT3G57690.1 arabinogalactan protein 231.5e-0857.38Show/hide
Query:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL
        M MKK+ C +LFAAA+++AV+A+ E  A APGP+S AA+AA+PA+G+ +GAS+ +LF+YYL
Subjt:  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGAAGAAGGTTACCTGCGCCCTCCTCTTCGCTGCTGCCACCGTGAGCGCGGTTGTGGCCTCCGCTGAAGCCCCAGCTCTGGCCCCTGGCCCCTCCTCCGATGC
GGCTGCTGCTGCTGTGCCTGCTGTTGGAGCGTTCATTGGCGCTTCTGTTGCGACGTTGTTTGCGTACTACTTAGAAACTTGTAAAGGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATGAAGAAGGTTACCTGCGCCCTCCTCTTCGCTGCTGCCACCGTGAGCGCGGTTGTGGCCTCCGCTGAAGCCCCAGCTCTGGCCCCTGGCCCCTCCTCCGATGC
GGCTGCTGCTGCTGTGCCTGCTGTTGGAGCGTTCATTGGCGCTTCTGTTGCGACGTTGTTTGCGTACTACTTAGAAACTTGTAAAGGGTTTTGA
Protein sequenceShow/hide protein sequence
MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYYLETCKGF