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Carg01259 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01259
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionribosome production factor 1
Genome locationCarg_Chr06:351995..353900
RNA-Seq ExpressionCarg01259
SyntenyCarg01259
Gene Ontology termsGO:0000460 - maturation of 5.8S rRNA (biological process)
GO:0000470 - maturation of LSU-rRNA (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domainsIPR007109 - Brix domain
IPR044281 - U3 snoRNP protein/Ribosome production factor 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027746.1 Ribosome production factor 1 [Cucurbita argyrosperma subsp. argyrosperma]3.6e-82100Show/hide
Query:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKVQLIFVFSNEHTEGKGKLEN
        IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKVQLIFVFSNEHTEGKGKLEN
Subjt:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKVQLIFVFSNEHTEGKGKLEN

XP_008443155.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo]5.2e-6593.06Show/hide
Query:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKN+ +IPSMIKNKEKRAEVHANLK+QKKLEKRKRAKARDAAEKQALELGEE PPRK PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
        I+PKVLITTCRFNS+IGP FISELLSVIPNAHYYKRGTNDLKK+
Subjt:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

XP_022943997.1 ribosome production factor 1 [Cucurbita moschata]2.4e-7098.61Show/hide
Query:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKNRDL+PSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
        IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKK+
Subjt:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

XP_022971273.1 ribosome production factor 1 [Cucurbita maxima]1.9e-7099.31Show/hide
Query:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
        IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKK+
Subjt:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

XP_038906205.1 ribosome production factor 1 [Benincasa hispida]1.2e-6492.36Show/hide
Query:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEE KNR +IPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEE PPRK PRTIENTREVDET+CKPDDEELFAGNDADEFSSIIKR+
Subjt:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
        I+PKVLITTCRFNS+IGP FISELLSVIPNAHYYKRGTNDLKK+
Subjt:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

TrEMBL top hitse value%identityAlignment
A0A0A0LH42 Brix domain-containing protein3.6e-6490.97Show/hide
Query:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKN+ ++PS IKNKEKRAEVHANLK+QKKLEKRKRAKARDAAEKQALELGEE PPRK PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
        I+PK+LITTCRFNS+IGP FISELLSVIPNAHYYKRGTNDLKK+
Subjt:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

A0A1S3B854 ribosome production factor 1 isoform X12.5e-6593.06Show/hide
Query:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKN+ +IPSMIKNKEKRAEVHANLK+QKKLEKRKRAKARDAAEKQALELGEE PPRK PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
        I+PKVLITTCRFNS+IGP FISELLSVIPNAHYYKRGTNDLKK+
Subjt:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

A0A5A7UHC7 Ribosome production factor 1 isoform X12.5e-6593.06Show/hide
Query:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKN+ +IPSMIKNKEKRAEVHANLK+QKKLEKRKRAKARDAAEKQALELGEE PPRK PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
        I+PKVLITTCRFNS+IGP FISELLSVIPNAHYYKRGTNDLKK+
Subjt:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

A0A6J1FUK1 ribosome production factor 11.2e-7098.61Show/hide
Query:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKNRDL+PSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
        IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKK+
Subjt:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

A0A6J1I6C8 ribosome production factor 19.0e-7199.31Show/hide
Query:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
        IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKK+
Subjt:  IVPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

SwissProt top hitse value%identityAlignment
Q5R631 Ribosome production factor 11.4e-1236.36Show/hide
Query:  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRF
        S IKNKE+R   H      K+ +++++  A+   +K+   LG++ PP+  P+TI+N R  DET   P+DEE+      DEF+S   +   PK+LITT   
Subjt:  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRF

Query:  NSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
                  +L +VIPN+H Y R    LKK+
Subjt:  NSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

Q6IQU6 Ribosome production factor 13.7e-1340.91Show/hide
Query:  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRF
        S IKNK++R  +   LK +K+ +KR   K +   E++AL+  ++ PP++ P+TIEN R  DET   P+DEE+      DEFS+   R   PKVLITT   
Subjt:  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRF

Query:  NSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
               F  +L +VIP+A+ Y R    LKKV
Subjt:  NSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

Q7TND5 Ribosome production factor 15.3e-1235.61Show/hide
Query:  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRF
        S IKNK++R   H      K+ +++++  A+   +K+   LG++ PP+  P+TI+N R  DET   P+DEE+      DEF+S   R   PK+LITT   
Subjt:  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRF

Query:  NSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
                  +L +VIP++H Y R    LKK+
Subjt:  NSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

Q8AVP1 Ribosome production factor 11.7e-1338.97Show/hide
Query:  SMIKNKEKRAEVHANLKNQKKLEK----RKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLIT
        S IKNK++R  +   LK +K+ EK    +KR K R+A       LG++ PP+  P+TIEN R  DET   P DEE+      DEF+    +   PK+LIT
Subjt:  SMIKNKEKRAEVHANLKNQKKLEK----RKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLIT

Query:  TCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
        T          F  +L S+IPN+  Y R    LKK+
Subjt:  TCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

Q9H9Y2 Ribosome production factor 13.1e-1235.61Show/hide
Query:  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRF
        S IKNK++R   H      K+ +++++  A+   +K+   LG++ PP+  P+TI+N R  DET   P+DEE+      DEF+S   +   PK+LITT   
Subjt:  SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRF

Query:  NSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
                  +L +VIPN+H Y R    LKK+
Subjt:  NSSIGPDFISELLSVIPNAHYYKRGTNDLKKV

Arabidopsis top hitse value%identityAlignment
AT4G01560.1 Ribosomal RNA processing Brix domain protein2.5e-4969.23Show/hide
Query:  GEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDI
        G EK+N  ++PSMIKNK+KR++V+A  K++KKLEK+K+ +ARDAAEK+ALELGEEPP +  P+TIENTRE DETVC+PDDEELFA  DADEF+ +++R+I
Subjt:  GEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDI

Query:  VPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV
         PKVL+TTCRFNS+ GP  ISELLSVIPN+HY KRGT DLKK+
Subjt:  VPKVLITTCRFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGGAGAAGAAGAACAGGGATTTAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCAGAAGTTCATGCCAACCTCAAAAATCAGAAGAAGCTTGAGAAACG
CAAGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGTGAAGAACCTCCTCCTAGGAAAACTCCTCGCACCATTGAGAACACCAGGGAGGTTGATG
AGACTGTTTGCAAACCTGATGATGAAGAGCTATTTGCCGGAAATGATGCTGACGAATTTAGTTCCATCATAAAGCGGGACATTGTGCCAAAAGTTTTAATTACTACTTGT
CGTTTTAATTCTAGTATTGGACCTGATTTTATATCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAATGATTTGAAGAAGGTTCAACTCAT
ATTTGTATTTTCTAATGAACACACAGAAGGAAAAGGAAAATTGGAAAATTAA
mRNA sequenceShow/hide mRNA sequence
AAATAAAATGAGAACAAGAAAAAACCCAAAACCCTTACAATCGGTGGGCTTCAACTCTGCCGCCTCTCCCGCTTCTCCACCGGCGCGCCTTTTCTTCTTCCTATTCCGCA
ATCTATATTTCGGGTTGATCAGGGAGTATAAATGGGAGAGGAGAAGAAGAACAGGGATTTAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCAGAAGTTCATGCCA
ACCTCAAAAATCAGAAGAAGCTTGAGAAACGCAAGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGTGAAGAACCTCCTCCTAGGAAAACTCCT
CGCACCATTGAGAACACCAGGGAGGTTGATGAGACTGTTTGCAAACCTGATGATGAAGAGCTATTTGCCGGAAATGATGCTGACGAATTTAGTTCCATCATAAAGCGGGA
CATTGTGCCAAAAGTTTTAATTACTACTTGTCGTTTTAATTCTAGTATTGGACCTGATTTTATATCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAG
GAACTAATGATTTGAAGAAGGTTCAACTCATATTTGTATTTTCTAATGAACACACAGAAGGAAAAGGAAAATTGGAAAATTAA
Protein sequenceShow/hide protein sequence
MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTC
RFNSSIGPDFISELLSVIPNAHYYKRGTNDLKKVQLIFVFSNEHTEGKGKLEN