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Carg01295 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01295
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsigma factor binding protein 2, chloroplastic-like
Genome locationCarg_Chr06:158608..158979
RNA-Seq ExpressionCarg01295
SyntenyCarg01295
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596170.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.5e-5999.19Show/hide
Query:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQ-DDDDDEQLLLHWAAM
        MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQ DDDDDEQLLLHWAAM
Subjt:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQ-DDDDDEQLLLHWAAM

Query:  EDSSDGFLGGYFHEGHGGQIGGLT
        EDSSDGFLGGYFHEGHGGQIGGLT
Subjt:  EDSSDGFLGGYFHEGHGGQIGGLT

KAG7027710.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-60100Show/hide
Query:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAME
        MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAME
Subjt:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAME

Query:  DSSDGFLGGYFHEGHGGQIGGLT
        DSSDGFLGGYFHEGHGGQIGGLT
Subjt:  DSSDGFLGGYFHEGHGGQIGGLT

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]2.2e-1554.55Show/hide
Query:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSAS--SASVETPETNVRKIQDDDDDEQLLLHWA-
        M+ +L+  E+E  +KE R+ RK   +KNQPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS++  E N+ K ++ DDDE+  L  A 
Subjt:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSAS--SASVETPETNVRKIQDDDDDEQLLLHWA-

Query:  AMEDSSDGFL
         MEDS+D FL
Subjt:  AMEDSSDGFL

XP_022941301.1 uncharacterized protein LOC111446639 [Cucurbita moschata]2.1e-5092.24Show/hide
Query:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAME
        MESSLVGR+VEE RKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASV+TPETNVRKIQDDDDDEQLLLHWAAME
Subjt:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAME

Query:  DSSDGFLGGYFHEGHG
        DSSDGFLGG +    G
Subjt:  DSSDGFLGGYFHEGHG

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]4.7e-4284.17Show/hide
Query:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQ--DDDDDEQLLLHWAA
        MESSLVGR+VEE RKERRR RKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQ+LTGQDAPKFPP   SASVETPETNVRKIQ  DDDDD+QLLLHWAA
Subjt:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQ--DDDDDEQLLLHWAA

Query:  --MEDSSDGFLGGYFHEGHG
          MEDSSD FLGG +    G
Subjt:  --MEDSSDGFLGGYFHEGHG

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein7.4e-0942.34Show/hide
Query:  MESSLVGREVEEERKER---RRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASV--ETPETNVRKIQDDDDDE
        M+ SL+  E+    K+     R RK C+   QPLKVVYISNPMRV  SA+EFR LVQELTG+DA      KF P++S   +  +  E  V   + ++D++
Subjt:  MESSLVGREVEEERKER---RRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASV--ETPETNVRKIQDDDDDE

Query:  QLLLHWAAMED
        +LL+  +  +D
Subjt:  QLLLHWAAMED

A0A1S3B8H6 uncharacterized protein LOC1034871677.9e-1146.81Show/hide
Query:  ERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAMED
        ++K+  R RK C+   QPLKVVYISNPMRV  SA+EFR LVQELTG+DA      KF P++    +   E  V   Q +DD+++LL+  +  +D
Subjt:  ERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAMED

A0A5D3DPQ4 Sigma factor binding protein 27.9e-1146.81Show/hide
Query:  ERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAMED
        ++K+  R RK C+   QPLKVVYISNPMRV  SA+EFR LVQELTG+DA      KF P++    +   E  V   Q +DD+++LL+  +  +D
Subjt:  ERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAMED

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like1.1e-1554.55Show/hide
Query:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSAS--SASVETPETNVRKIQDDDDDEQLLLHWA-
        M+ +L+  E+E  +KE R+ RK   +KNQPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS++  E N+ K ++ DDDE+  L  A 
Subjt:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSAS--SASVETPETNVRKIQDDDDDEQLLLHWA-

Query:  AMEDSSDGFL
         MEDS+D FL
Subjt:  AMEDSSDGFL

A0A6J1FKR4 uncharacterized protein LOC1114466391.0e-5092.24Show/hide
Query:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAME
        MESSLVGR+VEE RKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASV+TPETNVRKIQDDDDDEQLLLHWAAME
Subjt:  MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAME

Query:  DSSDGFLGGYFHEGHG
        DSSDGFLGG +    G
Subjt:  DSSDGFLGGYFHEGHG

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic9.6e-0633.33Show/hide
Query:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPS-------------ASSASVETPETNVRKIQDDDDDEQLLLHWAAMEDSSDG
        + ++     ++P+KV YISNPMRV+   ++FR LVQELTGQDA   PPS              S  ++E  +  VR       DE++          S  
Subjt:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPS-------------ASSASVETPETNVRKIQDDDDDEQLLLHWAAMEDSSDG

Query:  FLGGYFHEGHGGQIGGL
        F  G+++    G IG L
Subjt:  FLGGYFHEGHGGQIGGL

Q9LDH1 Sigma factor binding protein 1, chloroplastic8.7e-0733.07Show/hide
Query:  SSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA------PKFPPSASSASVETPETNVRK---------IQDDD
        +SL  ++     ++  + +K     N+P+KV YISNPMRVQ  A++FR LVQELTGQDA      P + PS+   ++  P  N+            +D D
Subjt:  SSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA------PKFPPSASSASVETPETNVRK---------IQDDD

Query:  DDEQLLLHWAAMEDSSDGFLGGYFHEG
          E L      + D       G+F  G
Subjt:  DDEQLLLHWAAMEDSSDGFLGGYFHEG

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein6.8e-0733.33Show/hide
Query:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPS-------------ASSASVETPETNVRKIQDDDDDEQLLLHWAAMEDSSDG
        + ++     ++P+KV YISNPMRV+   ++FR LVQELTGQDA   PPS              S  ++E  +  VR       DE++          S  
Subjt:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPS-------------ASSASVETPETNVRKIQDDDDDEQLLLHWAAMEDSSDG

Query:  FLGGYFHEGHGGQIGGL
        F  G+++    G IG L
Subjt:  FLGGYFHEGHGGQIGGL

AT3G56710.1 sigma factor binding protein 16.2e-0833.07Show/hide
Query:  SSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA------PKFPPSASSASVETPETNVRK---------IQDDD
        +SL  ++     ++  + +K     N+P+KV YISNPMRVQ  A++FR LVQELTGQDA      P + PS+   ++  P  N+            +D D
Subjt:  SSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA------PKFPPSASSASVETPETNVRK---------IQDDD

Query:  DDEQLLLHWAAMEDSSDGFLGGYFHEG
          E L      + D       G+F  G
Subjt:  DDEQLLLHWAAMEDSSDGFLGGYFHEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCGAGTTTAGTTGGGAGGGAGGTGGAAGAGGAGAGGAAAGAAAGGAGAAGGAACAGGAAACCCTGTGATCGGAAGAACCAACCTCTCAAAGTTGTGTACATATC
CAACCCCATGAGGGTTCAAGCCAGTGCGGCTGAGTTTAGAGGCCTGGTTCAAGAACTCACCGGCCAAGATGCGCCCAAGTTTCCTCCTTCCGCCTCCTCGGCCTCGGTGG
AGACTCCGGAGACTAATGTTCGAAAGATACAAGACGACGACGACGATGAACAACTCTTACTTCACTGGGCTGCAATGGAGGATTCCAGTGATGGTTTCCTTGGAGGGTAT
TTTCATGAGGGACATGGTGGACAAATTGGCGGCTTGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCGAGTTTAGTTGGGAGGGAGGTGGAAGAGGAGAGGAAAGAAAGGAGAAGGAACAGGAAACCCTGTGATCGGAAGAACCAACCTCTCAAAGTTGTGTACATATC
CAACCCCATGAGGGTTCAAGCCAGTGCGGCTGAGTTTAGAGGCCTGGTTCAAGAACTCACCGGCCAAGATGCGCCCAAGTTTCCTCCTTCCGCCTCCTCGGCCTCGGTGG
AGACTCCGGAGACTAATGTTCGAAAGATACAAGACGACGACGACGATGAACAACTCTTACTTCACTGGGCTGCAATGGAGGATTCCAGTGATGGTTTCCTTGGAGGGTAT
TTTCATGAGGGACATGGTGGACAAATTGGCGGCTTGACTTGA
Protein sequenceShow/hide protein sequence
MESSLVGREVEEERKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVETPETNVRKIQDDDDDEQLLLHWAAMEDSSDGFLGGY
FHEGHGGQIGGLT