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Carg01350 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01350
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionribonuclease P protein subunit p38
Genome locationCarg_Chr15:4557622..4561135
RNA-Seq ExpressionCarg01350
SyntenyCarg01350
Gene Ontology termsGO:0043232 - intracellular non-membrane-bounded organelle (cellular component)
InterPro domainsIPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579150.1 hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sororia]1.9e-86100Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

XP_022938626.1 ribonuclease P protein subunit p38 [Cucurbita moschata]1.2e-8599.41Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPS DSARIVNPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

XP_022993803.1 ribonuclease P protein subunit p38 [Cucurbita maxima]2.4e-8196.45Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRAR LNA+SLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSAR +NPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLIGEIL RTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

XP_023549838.1 ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo]5.6e-8698.82Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAE+LPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSP+NQLIGEILQRTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

XP_038875290.1 ribonuclease P protein subunit p38 [Benincasa hispida]2.8e-7791.12Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL
        MGKKAKSS P AV+QSK NEDSYEGERLDE LQSIQREIK AR LNAESLPEKIWLKKQFAIGVNEVTRVLERMTPS DSARI+NPNYKACTV+LQA+LL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TA+CNPRWLTNHVPSLA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLI EILQR T
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

TrEMBL top hitse value%identityAlignment
A0A1S3CQV2 ribonuclease P protein subunit p38 isoform X51.8e-6985.29Show/hide
Query:  MGKKAKSSG-PVAVVQSKRNED-SYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAI
        MGK  KSS  PVA +QSK  ED SYEGERLDELL SIQREIK AR LNAESLPEK WLKKQFAIGVNEVTR LERMTP  DSAR++NPNYKAC V+LQAI
Subjt:  MGKKAKSSG-PVAVVQSKRNED-SYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAI

Query:  LLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT
        LLTA+CNPRWLTNHVP LA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+NGSPVNQLI EILQRT
Subjt:  LLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT

A0A1S3CR39 ribonuclease P protein subunit p38 isoform X67.1e-7185.8Show/hide
Query:  MGKKAKSSG-PVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAIL
        MGK  KSS  PVA +QSK  EDSYEGERLDELL SIQREIK AR LNAESLPEK WLKKQFAIGVNEVTR LERMTP  DSAR++NPNYKAC V+LQAIL
Subjt:  MGKKAKSSG-PVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAIL

Query:  LTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT
        LTA+CNPRWLTNHVP LA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+NGSPVNQLI EILQRT
Subjt:  LTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT

A0A6J1CZ90 ribonuclease P protein subunit p386.4e-7284.52Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL
        MGKKAKSS    VV+SK ++D YEG+RLDELLQSIQREIKRAR LNAESLP KIWLKKQFA+GVNEVTRVLERMTPS DSARI+NPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT
          DCNPRWLTNH+P+LA+SR VPL+L+KDKEGSLRLGELVNLKTAIAIGIKANGS +NQLIGEILQ T
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT

A0A6J1FDN9 ribonuclease P protein subunit p386.0e-8699.41Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPS DSARIVNPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

A0A6J1K3C5 ribonuclease P protein subunit p381.2e-8196.45Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRAR LNA+SLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSAR +NPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLIGEIL RTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

SwissProt top hitse value%identityAlignment
P78345 Ribonuclease P protein subunit p381.1e-0430.36Show/hide
Query:  LKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGS
        ++KQ AIGVNEVTR LER                     L  +L+     P  +T+H+  L++SR VP   V     S R+  ++ LK  +A+  K N +
Subjt:  LKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGS

Query:  PVNQLIGEILQR
             +  I+ R
Subjt:  PVNQLIGEILQR

Q32LC1 Ribonuclease P protein subunit p386.5e-0532.14Show/hide
Query:  LKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGS
        ++KQ AIG+NEVTR LER                     L   L      P  +T+H+  L++SR VP   V     S RL  ++ LK  +A+G K N +
Subjt:  LKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGS

Query:  PVNQLIGEILQR
           + +  IL R
Subjt:  PVNQLIGEILQR

Q80UU2 Ribonuclease P protein subunit p385.5e-0431Show/hide
Query:  IWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKAN
        + ++KQ  IGVNEVTR LER                     L  +L+     P  +T+H+  L++SR VP   V   + S R+  ++ LK  +A+G + N
Subjt:  IWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKAN

Arabidopsis top hitse value%identityAlignment
AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.7e-4057.62Show/hide
Query:  RNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLA
        +  D YEGERL  LL  IQR I+ ++  N  SLPEKIWLKKQ AIG+NEVTRVLERM P+  S +  NP       +LQ ++L ADC PR LT H+P+LA
Subjt:  RNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLA

Query:  ISRKVPLILVKD-KEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQR
         SR VP++ V+D K  SLRLGELV LKTA+AIGIKA G+ +N L+ +IL R
Subjt:  ISRKVPLILVKD-KEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCCAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAG
GGAGATAAAGAGAGCAAGATGTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGA
TGACGCCAAGTGAAGATTCTGCTCGCATAGTGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACA
AACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATTGC
TATTGGAATAAAGGCGAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTCAAAGAACAACATAA
mRNA sequenceShow/hide mRNA sequence
AGGAGGCAGTAGTTCGTCCAGTTCCAGTACGGCGTTAGTCCAATCGGAGAACGCCGCTGCTATTTCTCTCAAGCTACACTTTCGAGCAAGTTTTCAGGCATGGGAAAGAA
GGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCCAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGGAGATAAAGA
GAGCAAGATGTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGT
GAAGATTCTGCTCGCATAGTGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCC
AAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATTGCTATTGGAATAA
AGGCGAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTCAAAGAACAACATAAAAACACGTCGCAGAATACAACAAAGTTGTCTGGTGTACAGTAAAAATGGTA
TGAAGTAGGAGCAAATTCTTGTCCTGATTTCTAGTTCGTGCTGATTCACCCTTGATAATGGCCGCCACTTTTAGTATCCTTATGAAGAATGTTTGCATGAGATGGTAGGA
TAGCAATTCTTATGTAATACATTGGGGGATTCCAAATTGCGTGCGGAGTTTAAATAGTGTTGTTATTGTGGCTGTTTGAAATGCCTTTAATTGTTTTTTTAGGGAAATCT
TCGGTTTATATTCCCATTTCAACTCAATATTCTTTACAATGATTTGA
Protein sequenceShow/hide protein sequence
MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLT
NHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT