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Carg01406 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01406
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationCarg_Chr15:4224240..4225304
RNA-Seq ExpressionCarg01406
SyntenyCarg01406
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0050794 - regulation of cellular process (biological process)
GO:0050896 - response to stimulus (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016613.1 hypothetical protein SDJN02_21723, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-91100Show/hide
Query:  MGRQMLDPMLIANELMEDFGYSKESWIFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGSNEVSAVALEWGCTVGTS
        MGRQMLDPMLIANELMEDFGYSKESWIFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGSNEVSAVALEWGCTVGTS
Subjt:  MGRQMLDPMLIANELMEDFGYSKESWIFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGSNEVSAVALEWGCTVGTS

Query:  PLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSLKGQTDVNHFYTVCN
        PLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSLKGQTDVNHFYTVCN
Subjt:  PLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSLKGQTDVNHFYTVCN

RVW15378.1 putative ribonuclease H protein [Vitis vinifera]1.3e-1336.24Show/hide
Query:  GRQMLDPMLIANELMEDFGYS-KESWIFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGSNEVSAVALEWGCTVGTS
        G+Q+LD +LIANE++++   S +E  +F + FEKAYD       LR   V   +      +   +   +    + G++++   N +S +A    C V + 
Subjt:  GRQMLDPMLIANELMEDFGYS-KESWIFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGSNEVSAVALEWGCTVGTS

Query:  PLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKS
        P+ YLG+PLGGNPK   FW  VI++I RRLD WK   L+ G +I L +S
Subjt:  PLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKS

RVW23874.1 hypothetical protein CK203_094655 [Vitis vinifera]2.3e-1535.36Show/hide
Query:  MGRQMLDPMLIANELMEDFGYSKE-SWIFMLAFEKAYD-------------MGTGT--FSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIK----
        MGRQ+LD  LIANE+++ +   KE   I  L  EKAYD             MG G+   S R  +   L ++G++    LI + V  G+L    ++    
Subjt:  MGRQMLDPMLIANELMEDFGYSKE-SWIFMLAFEKAYD-------------MGTGT--FSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIK----

Query:  -------GGSNEVSAVALEWGCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSL
               G   E+  +A+E GC VG+ P +YLG+PLG   K PS W  V +K+ RRL RWK   +++G +I L +S   S+
Subjt:  -------GGSNEVSAVALEWGCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSL

RVW34350.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.3e-1436.02Show/hide
Query:  MGRQMLDPMLIANELMEDFGYSKESWIF-MLAFEKAYDMGTGTFSLR-----CSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGS-NEVSAVALEW
        MGRQ+LD  LIANE+++ +   KE  +   L  EKAYD     F ++       +   L ++G++    LI + V  GFL    I  G  +++  +A+E 
Subjt:  MGRQMLDPMLIANELMEDFGYSKESWIF-MLAFEKAYDMGTGTFSLR-----CSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGS-NEVSAVALEW

Query:  GCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSL
        GC VG+ P +YLG+PLG   K  S W  V +++ RRL  WK   +++G +I L KS   S+
Subjt:  GCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSL

RVW74509.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]6.2e-1339.62Show/hide
Query:  GRQMLDPMLIANELMEDFGYSKESW-IFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPL------IDKGVGDGFLKGVS----IKGGSNEVSAVA
        GRQ+LD +LIANE++++   S +   +F + FEKAYD      S     VKA +  GL Q  PL      I   V    L  V     ++G  N +S +A
Subjt:  GRQMLDPMLIANELMEDFGYSKESW-IFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPL------IDKGVGDGFLKGVS----IKGGSNEVSAVA

Query:  LEWGCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKS
            C     P+ YLG+PLGGNPK   FW  VI+ I RRLD W+   L+ G KI L +S
Subjt:  LEWGCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKS

TrEMBL top hitse value%identityAlignment
A0A438BWR9 Putative ribonuclease H protein6.1e-1436.24Show/hide
Query:  GRQMLDPMLIANELMEDFGYS-KESWIFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGSNEVSAVALEWGCTVGTS
        G+Q+LD +LIANE++++   S +E  +F + FEKAYD       LR   V   +      +   +   +    + G++++   N +S +A    C V + 
Subjt:  GRQMLDPMLIANELMEDFGYS-KESWIFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGSNEVSAVALEWGCTVGTS

Query:  PLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKS
        P+ YLG+PLGGNPK   FW  VI++I RRLD WK   L+ G +I L +S
Subjt:  PLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKS

A0A438CKY2 Reverse transcriptase domain-containing protein1.1e-1535.36Show/hide
Query:  MGRQMLDPMLIANELMEDFGYSKE-SWIFMLAFEKAYD-------------MGTGT--FSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIK----
        MGRQ+LD  LIANE+++ +   KE   I  L  EKAYD             MG G+   S R  +   L ++G++    LI + V  G+L    ++    
Subjt:  MGRQMLDPMLIANELMEDFGYSKE-SWIFMLAFEKAYD-------------MGTGT--FSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIK----

Query:  -------GGSNEVSAVALEWGCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSL
               G   E+  +A+E GC VG+ P +YLG+PLG   K PS W  V +K+ RRL RWK   +++G +I L +S   S+
Subjt:  -------GGSNEVSAVALEWGCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSL

A0A438DFX4 Transposon TX1 uncharacterized 149 kDa protein1.6e-1436.02Show/hide
Query:  MGRQMLDPMLIANELMEDFGYSKESWIF-MLAFEKAYDMGTGTFSLR-----CSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGS-NEVSAVALEW
        MGRQ+LD  LIANE+++ +   KE  +   L  EKAYD     F ++       +   L ++G++    LI + V  GFL    I  G  +++  +A+E 
Subjt:  MGRQMLDPMLIANELMEDFGYSKESWIF-MLAFEKAYDMGTGTFSLR-----CSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGS-NEVSAVALEW

Query:  GCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSL
        GC VG+ P +YLG+PLG   K  S W  V +++ RRL  WK   +++G +I L KS   S+
Subjt:  GCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSL

A0A438GQL8 Transposon TX1 uncharacterized 149 kDa protein3.0e-1339.62Show/hide
Query:  GRQMLDPMLIANELMEDFGYSKESW-IFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPL------IDKGVGDGFLKGVS----IKGGSNEVSAVA
        GRQ+LD +LIANE++++   S +   +F + FEKAYD      S     VKA +  GL Q  PL      I   V    L  V     ++G  N +S +A
Subjt:  GRQMLDPMLIANELMEDFGYSKESW-IFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPL------IDKGVGDGFLKGVS----IKGGSNEVSAVA

Query:  LEWGCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKS
            C     P+ YLG+PLGGNPK   FW  VI+ I RRLD W+   L+ G KI L +S
Subjt:  LEWGCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKS

A5C377 Uncharacterized protein3.9e-1335.12Show/hide
Query:  GRQMLDPMLIANELMEDFGYS-KESWIFMLAFEKAYD----------MGTGTFSLR---------CSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKG
        GRQ+LD +LIANE++++   + +E  +F + FEKAYD          +    FSLR          S+  A+ + G  +    +DK      + G++I+ 
Subjt:  GRQMLDPMLIANELMEDFGYS-KESWIFMLAFEKAYD----------MGTGTFSLR---------CSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKG

Query:  GSNEVSAVALEWGCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKS
          N +S +A+   C     P+ YLG+PLGGNPK   FW  VI++I RRLD W+   L+ G +I L +S
Subjt:  GSNEVSAVALEWGCTVGTSPLEYLGMPLGGNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGCAAATGCTTGACCCTATGTTGATTGCTAATGAGCTTATGGAAGACTTTGGTTATAGCAAGGAGAGTTGGATTTTCATGCTTGCTTTTGAGAAGGCTTATGA
TATGGGGACTGGGACTTTCTCCTTGAGGTGCTCAATTGTAAAAGCTTTGAAACTCGTTGGATTGGATCAAAGCATTCCCCTGATTGACAAAGGTGTGGGGGATGGTTTCC
TGAAGGGCGTATCCATCAAAGGTGGAAGTAATGAAGTTTCAGCAGTGGCACTGGAGTGGGGATGTACGGTTGGCACCTCACCTCTTGAATACTTGGGGATGCCCCTCGGT
GGTAATCCAAAACAGCCTTCTTTTTGGCCGCTTGTTATTGATAAAATTGAGAGAAGGTTAGACCGATGGAAGAGCCTTGCTCTCACAAGAGGACGCAAAATTAGGTTGGC
TAAATCGGGCTCTCAGTCCCTTAAAGGCCAAACGGACGTGAACCACTTTTACACTGTTTGCAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGCAAATGCTTGACCCTATGTTGATTGCTAATGAGCTTATGGAAGACTTTGGTTATAGCAAGGAGAGTTGGATTTTCATGCTTGCTTTTGAGAAGGCTTATGA
TATGGGGACTGGGACTTTCTCCTTGAGGTGCTCAATTGTAAAAGCTTTGAAACTCGTTGGATTGGATCAAAGCATTCCCCTGATTGACAAAGGTGTGGGGGATGGTTTCC
TGAAGGGCGTATCCATCAAAGGTGGAAGTAATGAAGTTTCAGCAGTGGCACTGGAGTGGGGATGTACGGTTGGCACCTCACCTCTTGAATACTTGGGGATGCCCCTCGGT
GGTAATCCAAAACAGCCTTCTTTTTGGCCGCTTGTTATTGATAAAATTGAGAGAAGGTTAGACCGATGGAAGAGCCTTGCTCTCACAAGAGGACGCAAAATTAGGTTGGC
TAAATCGGGCTCTCAGTCCCTTAAAGGCCAAACGGACGTGAACCACTTTTACACTGTTTGCAACTAA
Protein sequenceShow/hide protein sequence
MGRQMLDPMLIANELMEDFGYSKESWIFMLAFEKAYDMGTGTFSLRCSIVKALKLVGLDQSIPLIDKGVGDGFLKGVSIKGGSNEVSAVALEWGCTVGTSPLEYLGMPLG
GNPKQPSFWPLVIDKIERRLDRWKSLALTRGRKIRLAKSGSQSLKGQTDVNHFYTVCN