CuGenDBv2

Gene ID	Carg01408
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	glucosidase 2 subunit beta
Genome location	Carg_Chr15:4194032..4194658
RNA-Seq Expression	Carg01408
Synteny	Carg01408
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579085.1 hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sororia]

4.6e-98

98.1

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Query:  MAETAKVDRKDRRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPP
        MAETAKVDRKDRRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPP
Subjt:  MAETAKVDRKDRRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPP

Query:  PIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDEDDEDDDDEEFNSSDEDIDD
        PIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE   EDDEDDEDDDDEEF+SSDEDIDD
Subjt:  PIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDEDDEDDDDEEFNSSDEDIDD

Query:  RKKERRKKKAT
        RKKERRKKKAT
Subjt:  RKKERRKKKAT

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-100

100

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Query:  MAETAKVDRKDRRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPP
        MAETAKVDRKDRRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPP
Subjt:  MAETAKVDRKDRRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPP

Query:  PIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRKK
        PIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRKK
Subjt:  PIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRKK

Query:  ERRKKKAT
        ERRKKKAT
Subjt:  ERRKKKAT

XP_022939254.1 nucleolin [Cucurbita moschata]

2.6e-93

97.13

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Query:  MAETAKVDRKD-RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRP
        MAETAKVDRKD RRKMDFRKM SGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRP SSAAAASRNPRPSQPHHQSDSSSRP
Subjt:  MAETAKVDRKD-RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRP

Query:  PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK
        PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE   EDDEDDDDEEFNSSDEDIDDRK
Subjt:  PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK

Query:  KERRKKKAT
        KERRKKKAT
Subjt:  KERRKKKAT

XP_022993807.1 glucosidase 2 subunit beta [Cucurbita maxima]

1.4e-94

97.13

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Query:  MAETAKVDRKD-RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRP
        MAETAKVDRKD RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS  AAA RNPR SQPHHQSDSSSRP
Subjt:  MAETAKVDRKD-RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRP

Query:  PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK
        PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDA RLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK
Subjt:  PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK

Query:  KERRKKKAT
        KERRKKKAT
Subjt:  KERRKKKAT

XP_023550367.1 nucleolin [Cucurbita pepo subsp. pepo]

2.6e-93

96.65

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Query:  MAETAKVDRKD-RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRP
        MAETAKVD +D RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLK SVDSHMSRVSPNYLDSDLDRRFQALRSRP SSAAAASRNPRPSQ HHQSDSSSRP
Subjt:  MAETAKVDRKD-RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRP

Query:  PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK
        PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSI NDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK
Subjt:  PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK

Query:  KERRKKKAT
        KERRKKKAT
Subjt:  KERRKKKAT

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E6L5 uncharacterized protein LOC103502866

7.4e-70

83.42

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Query:  RKMGSGNED--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSR-PPPIENLVVDGESQSI
        +K G GN+D  EQ+EQLLQAAQDDL+LKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS+AAA  RNPR S PH QSDSSSR PPPIENLVVDGESQSI
Subjt:  RKMGSGNED--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSR-PPPIENLVVDGESQSI

Query:  LGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRKKERRKKKA
        LGDDLAARFAALKASLPSS TPP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDDE      +EEF SSDED++DR KERRKKKA
Subjt:  LGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRKKERRKKKA

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X3

4.3e-70

83.94

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Query:  RKMGSGNED--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSR-PPPIENLVVDGESQSI
        +K G GN+D  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS+AAA  RNPR S PH QSDSSSR PPPIENLVVDGESQSI
Subjt:  RKMGSGNED--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSR-PPPIENLVVDGESQSI

Query:  LGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRKKERRKKKA
        LGDDLAARFAALKASLPSS TPP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDDE      +EEF SSDED++DR KERRKKKA
Subjt:  LGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRKKERRKKKA

A0A6J1CIG2 uncharacterized protein LOC111011897

3.9e-71

80.69

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Query:  DRKDRRKMDFRKM--GSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPPPIENL
        + + RRKMDFRK   GSGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA RNPRPS    +SD  S+PP IENL
Subjt:  DRKDRRKMDFRKM--GSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPPPIENL

Query:  VVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRKKERRKK
         VDGESQSILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD    DD D+E +SSDED DDR+KERRKK
Subjt:  VVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRKKERRKK

Query:  KA
        KA
Subjt:  KA

A0A6J1FGM0 nucleolin

1.3e-93

97.13

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Query:  MAETAKVDRKD-RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRP
        MAETAKVDRKD RRKMDFRKM SGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRP SSAAAASRNPRPSQPHHQSDSSSRP
Subjt:  MAETAKVDRKD-RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRP

Query:  PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK
        PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSE   EDDEDDDDEEFNSSDEDIDDRK
Subjt:  PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK

Query:  KERRKKKAT
        KERRKKKAT
Subjt:  KERRKKKAT

A0A6J1JTW4 glucosidase 2 subunit beta

6.7e-95

97.13

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Query:  MAETAKVDRKD-RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRP
        MAETAKVDRKD RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS  AAA RNPR SQPHHQSDSSSRP
Subjt:  MAETAKVDRKD-RRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRP

Query:  PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK
        PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDA RLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK
Subjt:  PPIENLVVDGESQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRK

Query:  KERRKKKAT
        KERRKKKAT
Subjt:  KERRKKKAT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24370.1 unknown protein

4.1e-20

43.5

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Query:  GNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPPPIENLVVDGESQSILGDDLAAR
        G E+++VEQLLQAAQD+++LKLSVDSH SR S +YLD DL  RF AL+S+         +     QP  +      P                 +DL  R
Subjt:  GNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPPPIENLVVDGESQSILGDDLAAR

Query:  FAALKASLPSSITPP----PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDI
        FAALK SLPS+ +         I  D D   E+ EV+KLIQWA DAARLDPSP S+++   + D DDE  N S  D+
Subjt:  FAALKASLPSSITPP----PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDI

Sequences

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CDS sequence

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ATGGCGGAAACTGCTAAGGTCGACAGAAAGGATAGGAGGAAAATGGATTTCAGAAAGATGGGAAGTGGCAACGAAGACGAACAAGTCGAGCAATTGCTGCAAGCTGCTCA
GGATGATCTCATGCTGAAATTGAGCGTCGATTCACACATGTCGCGTGTATCACCAAACTATCTCGATTCCGATCTCGATCGCCGATTTCAAGCCCTAAGATCGCGACCTT
CCTCCTCCGCCGCCGCCGCTTCCCGCAATCCTCGCCCTTCTCAGCCGCATCATCAATCCGATTCCTCGTCGCGGCCACCGCCGATTGAAAATCTTGTCGTCGATGGCGAA
TCTCAGTCGATTCTCGGTGACGATCTCGCTGCTAGATTCGCTGCTTTGAAGGCGTCTTTGCCTTCCTCGATTACTCCGCCTCCGTCTTCGATACCTAACGATGTCGATAG
CGATGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCCAAGGATGCCGCTCGTCTCGATCCTTCGCCTCCGTCTGAGGAAGACGATGAAGACGATGAAGACGATG
ACGACGAGGAGTTCAACAGTTCCGATGAAGATATCGACGATCGGAAAAAAGAGCGTCGGAAAAAGAAGGCCACATGA

mRNA sequence

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Protein sequence

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MAETAKVDRKDRRKMDFRKMGSGNEDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSSAAAASRNPRPSQPHHQSDSSSRPPPIENLVVDGE
SQSILGDDLAARFAALKASLPSSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDEDIDDRKKERRKKKAT

Carg01408 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome