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Carg01463 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01463
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpentatricopeptide repeat-containing protein At1g66345, mitochondrial
Genome locationCarg_Chr15:3850824..3852169
RNA-Seq ExpressionCarg01463
SyntenyCarg01463
Gene Ontology termsGO:0000373 - Group II intron splicing (biological process)
GO:0000963 - mitochondrial RNA processing (biological process)
GO:0032981 - mitochondrial respiratory chain complex I assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR002885 - Pentatricopeptide repeat


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602029.1 DELLA protein GAI, partial [Cucurbita argyrosperma subsp. sororia]9.0e-1072Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQ
        M+ARLL PGVSVFFALIGS CQSGKLEEAEKYLKIMKD   ++    L++
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQ
KAG7016556.1 hypothetical protein SDJN02_21665, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-25100Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGSILVQWQD
        MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGSILVQWQD
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGSILVQWQD
KAG7032723.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-1066.67Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNIS-----NINLVQLEEGS
        M+ARLL PGVSVFFALIGS CQSGKLEEAEKYLKIMKD S   S      ++L  L++G+
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNIS-----NINLVQLEEGS
XP_008460528.1 PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Cucumis melo]3.1e-1090Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
        MEARLL PG+SVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
XP_022961108.1 pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Cucurbita moschata]5.3e-1066.67Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNIS-----NINLVQLEEGS
        M+ARLL PGVSVFFALIGS CQSGKLEEAEKYLKIMKD S   S      ++L  L++G+
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNIS-----NINLVQLEEGS
TrEMBL top hitse value%identityAlignment
A0A0A0KRP7 Uncharacterized protein7.5e-1090Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
        M ARLL PGVSVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
A0A1S3CCN8 pentatricopeptide repeat-containing protein At1g66345, mitochondrial1.5e-1090Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
        MEARLL PG+SVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
A0A5D3DTQ8 Pentatricopeptide repeat-containing protein1.5e-1090Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
        MEARLL PG+SVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
A0A6J1HAX5 pentatricopeptide repeat-containing protein At1g66345, mitochondrial2.6e-1066.67Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNIS-----NINLVQLEEGS
        M+ARLL PGVSVFFALIGS CQSGKLEEAEKYLKIMKD S   S      ++L  L++G+
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNIS-----NINLVQLEEGS
A0A6J1JRQ4 pentatricopeptide repeat-containing protein At1g66345, mitochondrial7.5e-1065Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNIS-----NINLVQLEEGS
        M+ARLL PGVSVFFALIGS CQSGKLEEAEKY KIMKD S   S      ++L  L++G+
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNIS-----NINLVQLEEGS
SwissProt top hitse value%identityAlignment
Q3ECH5 Pentatricopeptide repeat-containing protein At1g66345, mitochondrial4.5e-0459.46Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMK
        ME R + PG  VF +LI  LC  GK+E  EKYLKIMK
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMK
Arabidopsis top hitse value%identityAlignment
AT1G66345.1 Pentatricopeptide repeat (PPR) superfamily protein3.2e-0559.46Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMK
        ME R + PG  VF +LI  LC  GK+E  EKYLKIMK
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCAAGATTACTATGTCCTGGAGTGTCAGTTTTCTTTGCACTCATTGGGAGCCTTTGTCAATCTGGGAAATTGGAGGAAGCAGAGAAATATTTGAAGATCATGAA
AGATAGTTCTACCAATATATCAAACATTAACCTTGTTCAACTTGAAGAAGGTTCTATTCTGGTTCAATGGCAAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCAAGATTACTATGTCCTGGAGTGTCAGTTTTCTTTGCACTCATTGGGAGCCTTTGTCAATCTGGGAAATTGGAGGAAGCAGAGAAATATTTGAAGATCATGAA
AGATAGTTCTACCAATATATCAAACATTAACCTTGTTCAACTTGAAGAAGGTTCTATTCTGGTTCAATGGCAAGACTAA
Protein sequenceShow/hide protein sequence
MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGSILVQWQD