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Carg01466 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01466
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCalcium-binding EF-hand family protein
Genome locationCarg_Chr15:3839804..3840058
RNA-Seq ExpressionCarg01466
SyntenyCarg01466
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015880220.1 polcalcin Bet v 4 [Ziziphus jujuba]3.9e-3284.52Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        MADD KDK +RDRIFKRFD+NGDG+IS+ ELGESLK LGSVT DEV RMMAEIDTDGDG+ISY+EFTDFACANRGLI+DVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

XP_022141635.1 polcalcin Bet v 4 [Momordica charantia]7.9e-3386.9Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        MADD +DKV+RDRIFKRFDANGDG+ISA+ELGE+LKTLGSVT DEVQRMMAEIDTDGDG+ISYEEFTDFA ANRGL++DVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

XP_022939071.1 polcalcin Ole e 3-like [Cucurbita moschata]1.3e-38100Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

XP_022993440.1 polcalcin Ole e 3-like [Cucurbita maxima]3.1e-3798.81Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFA ANRGLIRDVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

XP_023548959.1 polcalcin Che a 3-like [Cucurbita pepo subsp. pepo]5.1e-3284.52Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        M+DDA+DKVDRDRIFKRFD NGDG+IS++ELGESLKTLGSVT DEV RMMAEIDTDGDG+ISYEEFT+FA ANRGL++DVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

TrEMBL top hitse value%identityAlignment
A0A6J1CIN1 polcalcin Bet v 43.8e-3386.9Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        MADD +DKV+RDRIFKRFDANGDG+ISA+ELGE+LKTLGSVT DEVQRMMAEIDTDGDG+ISYEEFTDFA ANRGL++DVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

A0A6J1FEW4 polcalcin Ole e 3-like6.1e-39100Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

A0A6J1JTH0 polcalcin Che a 3-like3.2e-3284.52Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        M+DDA+DKVDRDRIFKRFD NGDG+IS++ELGESLKTLGSVT DEV RMMAEIDTDGDG+ISYEEFT FA ANRGL++DVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

A0A6J1JYI8 polcalcin Ole e 3-like1.5e-3798.81Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFA ANRGLIRDVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

A0A6P3ZXK9 polcalcin Bet v 41.9e-3284.52Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        MADD KDK +RDRIFKRFD+NGDG+IS+ ELGESLK LGSVT DEV RMMAEIDTDGDG+ISY+EFTDFACANRGLI+DVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

SwissProt top hitse value%identityAlignment
O81092 Polcalcin Ole e 39.1e-3277.38Show/hide
Query:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        MADD ++  + +RIFKRFDANGDG+IS+SELGE+LKTLGSVTP+E+QRMMAEIDTDGDG+IS+EEFT FA ANRGL++DVAKIF
Subjt:  MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

P69198 Polcalcin Bra n 21.7e-3076.54Show/hide
Query:  DAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        DA +K + DRIFK+FDANGDG+ISASELG++LK LGSVT D+++RMMAEIDTDGDGYISY+EF+DFA ANRGL++DVAKIF
Subjt:  DAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

P69199 Polcalcin Bra r 21.7e-3076.54Show/hide
Query:  DAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        DA +K + DRIFK+FDANGDG+ISASELG++LK LGSVT D+++RMMAEIDTDGDGYISY+EF+DFA ANRGL++DVAKIF
Subjt:  DAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

Q39419 Polcalcin Bet v 49.1e-3277.65Show/hide
Query:  MADD-AKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        MADD  +DK +R+RIFKRFDANGDG+ISA+ELGE+LKTLGS+TPDEV+ MMAEIDTDGDG+IS++EFTDF  ANRGL++DVAKIF
Subjt:  MADD-AKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

Q84V36 Polcalcin Che a 37.7e-3176.83Show/hide
Query:  DDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        D  +D  DR+RIFKRFD NGDG+IS+SELG++LKTLGSVTPDEV+RMMAEIDTDGDG+IS++EFTDFA ANRGL++DV+KIF
Subjt:  DDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein4.5e-1038.1Show/hide
Query:  DAKDKVDRDRIFKRFDANGDGRISASELGESLKTLG-SVTPDEVQRMMAEIDTDGDGYISYEEFTDF--ACANRGLIRDVAKIF
        D  +  +  ++F +FD+NGDG+IS  ELG   K +G S T  E+ R++ E+DTD DGYI+ +EF+    + ++   IRD   ++
Subjt:  DAKDKVDRDRIFKRFDANGDGRISASELGESLKTLG-SVTPDEVQRMMAEIDTDGDGYISYEEFTDF--ACANRGLIRDVAKIF

AT1G24620.1 EF hand calcium-binding protein family6.9e-1148.28Show/hide
Query:  DRIFKRFDANGDGRISASELGESLKTLGSVTP-DEVQRMMAEIDTDGDGYISYEEFTD
        + +FK+FD NGDG+IS+ ELG  + +LG   P +E+++ + EID  GDGYI++EEF +
Subjt:  DRIFKRFDANGDGRISASELGESLKTLGSVTP-DEVQRMMAEIDTDGDGYISYEEFTD

AT1G73630.1 EF hand calcium-binding protein family9.0e-1154.55Show/hide
Query:  RIFKRFDANGDGRISASELGESLKTLG-SVTPDEVQRMMAEIDTDGDGYISYEEF
        ++F +FDANGDG+IS SELG   K++G S T +E+ R++ EID D DG+I+ EEF
Subjt:  RIFKRFDANGDGRISASELGESLKTLG-SVTPDEVQRMMAEIDTDGDGYISYEEF

AT3G03430.1 Calcium-binding EF-hand family protein1.3e-3074.07Show/hide
Query:  DAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        DA +K + DRIFK+FDANGDG+ISA+ELG++LK LGSVT ++++RMMAEIDTDGDGYISY+EF DFA ANRGL++DVAKIF
Subjt:  DAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF

AT5G17480.1 pollen calcium-binding protein 11.0e-3077.78Show/hide
Query:  DAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF
        DA +K + DRIFK+FDANGDG+ISA+EL E+LKTLGSVT D+V+RMMAEIDTDGDG ISY+EFTDFA ANRGL++DVAKIF
Subjt:  DAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGATGCTAAAGACAAAGTTGACCGAGACCGAATTTTCAAGCGCTTCGACGCCAATGGCGACGGTAGGATCTCTGCGTCGGAGCTCGGTGAATCCTTGAAGAC
GCTTGGCTCCGTTACCCCTGACGAAGTGCAGCGGATGATGGCAGAGATCGACACCGACGGGGACGGGTACATTTCATACGAAGAGTTCACAGATTTCGCCTGTGCCAACC
GTGGTTTAATCAGAGATGTTGCAAAGATATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGATGCTAAAGACAAAGTTGACCGAGACCGAATTTTCAAGCGCTTCGACGCCAATGGCGACGGTAGGATCTCTGCGTCGGAGCTCGGTGAATCCTTGAAGAC
GCTTGGCTCCGTTACCCCTGACGAAGTGCAGCGGATGATGGCAGAGATCGACACCGACGGGGACGGGTACATTTCATACGAAGAGTTCACAGATTTCGCCTGTGCCAACC
GTGGTTTAATCAGAGATGTTGCAAAGATATTCTAA
Protein sequenceShow/hide protein sequence
MADDAKDKVDRDRIFKRFDANGDGRISASELGESLKTLGSVTPDEVQRMMAEIDTDGDGYISYEEFTDFACANRGLIRDVAKIF