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Carg01479 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01479
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionStructural constituent of ribosome
Genome locationCarg_Chr15:3761430..3763184
RNA-Seq ExpressionCarg01479
SyntenyCarg01479
Gene Ontology termsNA
InterPro domainsIPR021410 - The fantastic four family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579017.1 hypothetical protein SDJN03_23465, partial [Cucurbita argyrosperma subsp. sororia]5.1e-9498.29Show/hide
Query:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF
        PSDINSDDYIGVESCVDLKDNDTAADI+PLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF
Subjt:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF

Query:  RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG
        RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKE+CTEAGGSEEGGKWCKYENVRDRDAAFMFGVEV AGSLRSVRG
Subjt:  RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG

KAG7016540.1 hypothetical protein SDJN02_21649 [Cucurbita argyrosperma subsp. argyrosperma]1.9e-112100Show/hide
Query:  MLKKRRRSKAVSEFWKLSIAADDFHLPSSPSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGS
        MLKKRRRSKAVSEFWKLSIAADDFHLPSSPSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGS
Subjt:  MLKKRRRSKAVSEFWKLSIAADDFHLPSSPSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGS

Query:  HIPWVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLR
        HIPWVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLR
Subjt:  HIPWVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLR

Query:  SVRG
        SVRG
Subjt:  SVRG

XP_022939970.1 uncharacterized protein LOC111445672 [Cucurbita moschata]1.1e-9398.29Show/hide
Query:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF
        PSDINSDDYIGVESCVDLKDNDTAADI+PLASFPEGGNSKRDIKTSWM RKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF
Subjt:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF

Query:  RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG
        RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEV AGSLRSVRG
Subjt:  RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG

XP_022992861.1 uncharacterized protein LOC111489066 [Cucurbita maxima]1.4e-8389.33Show/hide
Query:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF
        P+DINSDDYIG+ESCVDLK + TAADI+PLASFPEGGNSKRD KTSWM RK+QKNYPPPIPLLVRTENL SHIPWVMKRQYTGDGRLILTEEKVKHHEFF
Subjt:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF

Query:  RAHRSDGRLMLQLVTMDDQELDEDGD---EEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG
        RAHRSDGRLMLQLVTMDDQELDE+GD   EEE++EECTEAGGS EGGKWCKYENVRDRD AFMFGVEV AGSLRSVRG
Subjt:  RAHRSDGRLMLQLVTMDDQELDEDGD---EEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG

XP_023551237.1 uncharacterized protein LOC111809117 [Cucurbita pepo subsp. pepo]3.7e-8491.43Show/hide
Query:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF
        PSDINSDDYIGVESCVDLKD+DTA D +PLASFPEGGNSKRDIKTSWM RKDQKNYPPPIPLLVRTENL SHIPWVMKRQYTGDGRLILTEEKVKHHEFF
Subjt:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF

Query:  RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG
        RAHRSDGRLMLQLVTMDDQ+LDE+ D+EE +EE TEAGGS EGGKWCKYENVRDRDAAFMFGVEV+AGSLRSVRG
Subjt:  RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG

TrEMBL top hitse value%identityAlignment
A0A6J1CJ12 uncharacterized protein LOC1110118042.9e-4256.59Show/hide
Query:  PSSPSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHH
        PSS  + + DDYIG+ESCVDLK+N TAAD  P    P   + KR+ K      + ++ YPPPIPLLVRTENL SH+PWV+KR YTGDGRLILTEEKV+HH
Subjt:  PSSPSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHH

Query:  EFFRAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENV--RDRDAAFMFGVEV---TAGSLRSVR
        E+FRAHRSDGRLMLQLV +DD +  E G ++E ++E  E GG  +    C    +  R RD A MFGV V   +AG+LR+VR
Subjt:  EFFRAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENV--RDRDAAFMFGVEV---TAGSLRSVR

A0A6J1FP95 uncharacterized protein LOC1114456725.5e-9498.29Show/hide
Query:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF
        PSDINSDDYIGVESCVDLKDNDTAADI+PLASFPEGGNSKRDIKTSWM RKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF
Subjt:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF

Query:  RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG
        RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEV AGSLRSVRG
Subjt:  RAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG

A0A6J1GVY4 uncharacterized protein LOC1114580312.0e-3550.28Show/hide
Query:  DINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFFRA
        D + DDYIG+ESCVDL +N T++DIS       G N +RD K   MERKD   YPPPI LLVRTENL S +PWV+KR YT DGRLILTEE+++++EFFRA
Subjt:  DINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFFRA

Query:  HRSDGRLMLQLVTMDDQELDED-----GDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVR
        HRS+GRLMLQLV  DDQ  DE      G++    EEC  A    +           +  +    G +   G+LR+VR
Subjt:  HRSDGRLMLQLVTMDDQELDED-----GDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVR

A0A6J1JTI2 uncharacterized protein LOC1114873722.1e-3763.57Show/hide
Query:  DINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFFRA
        D + DDYIG+ESCVDL++N TAADIS       G N KRD K   MERKD   YPPPI LLVRTENL S +PWV+KR+YT DGRLILT+E+++H+EFFRA
Subjt:  DINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFFRA

Query:  HRSDGRLMLQLVTMDDQELDED----GDEE-EKKEECTEA
        HRSDGRLMLQLV  DDQ  DE     GDE+  + EEC  A
Subjt:  HRSDGRLMLQLVTMDDQELDED----GDEE-EKKEECTEA

A0A6J1JUP6 uncharacterized protein LOC1114890666.8e-8489.33Show/hide
Query:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF
        P+DINSDDYIG+ESCVDLK + TAADI+PLASFPEGGNSKRD KTSWM RK+QKNYPPPIPLLVRTENL SHIPWVMKRQYTGDGRLILTEEKVKHHEFF
Subjt:  PSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFF

Query:  RAHRSDGRLMLQLVTMDDQELDEDGD---EEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG
        RAHRSDGRLMLQLVTMDDQELDE+GD   EEE++EECTEAGGS EGGKWCKYENVRDRD AFMFGVEV AGSLRSVRG
Subjt:  RAHRSDGRLMLQLVTMDDQELDEDGD---EEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G22110.1 structural constituent of ribosome8.3e-2644.67Show/hide
Query:  SSPSDINSDDYIGVESCVDLKDNDTAADISPLASFP-----EGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEK
        SS S     DYIG ESC D+   D   D+  +AS P       G  +R+ + +       + +PPPIPLL +T NL  H+PWV+KR  T DGRLIL EEK
Subjt:  SSPSDINSDDYIGVESCVDLKDNDTAADISPLASFP-----EGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEK

Query:  VKHHEFFRAHRSDGRLMLQLVTMDDQELD-------EDGDEEEKKEECTE
        V+HHE+FRA+RS+GRL L LV +DD   D          D+EE  +EC +
Subjt:  VKHHEFFRAHRSDGRLMLQLVTMDDQELD-------EDGDEEEKKEECTE

AT1G77932.1 Protein of unknown function (DUF3049)5.1e-1540.98Show/hide
Query:  YIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGR
        YIG ESC +   + T     P     E     R+I +           PP +P         SH+P V+KR+YT DGRL+L EEKV  +E+FRAHRS+GR
Subjt:  YIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGR

Query:  LMLQLVTMDDQELDEDGDEEEK
        LM+QLV++D+   D+D D + K
Subjt:  LMLQLVTMDDQELDEDGDEEEK

AT5G22390.1 Protein of unknown function (DUF3049)1.7e-0728.1Show/hide
Query:  RSKAVSEFWKLSIAADDFHLPSSPSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVM
        R  + S + K S  A++  L      + S+ Y G+E      D D   D   +     G N + + +     RK++K YPP +  +              
Subjt:  RSKAVSEFWKLSIAADDFHLPSSPSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVM

Query:  KRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDEDGDEEEK
         + Y  +GRL+L E ++   EF RA R DGRL L+LV  +D   +E+ +E++K
Subjt:  KRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDEDGDEEEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAGAAGAGGCGGAGATCAAAGGCCGTTTCGGAGTTCTGGAAGCTCTCCATTGCCGCCGATGACTTCCACCTTCCATCCTCGCCGTCCGATATCAACAGCGATGA
TTACATAGGCGTGGAGAGTTGTGTCGATTTAAAAGACAACGACACGGCAGCCGACATAAGTCCCCTGGCGAGCTTCCCCGAGGGAGGAAATAGCAAGAGGGACATCAAAA
CGTCGTGGATGGAGAGAAAAGATCAGAAAAACTATCCCCCACCAATCCCATTATTGGTTCGCACTGAGAATCTGGGTTCCCACATACCATGGGTGATGAAACGGCAGTAC
ACAGGCGATGGACGGCTCATACTGACAGAGGAGAAAGTGAAACACCACGAGTTCTTCCGTGCCCACAGATCCGATGGACGCCTGATGCTACAGCTGGTGACCATGGACGA
CCAGGAGTTGGATGAGGACGGCGATGAGGAGGAGAAGAAGGAGGAGTGCACGGAGGCGGGAGGGAGTGAAGAAGGGGGAAAATGGTGTAAGTATGAGAACGTAAGAGACA
GAGATGCAGCGTTTATGTTCGGAGTGGAAGTGACTGCAGGAAGCTTGAGGAGTGTTCGAGGGTAA
mRNA sequenceShow/hide mRNA sequence
AAAATGCTAAAAAAGAAAACTGAACAAGAAAAAACGCGGCAAATATTAAAAAGAAAATAATTAAAAATAACTGATTTCAAGTTGCGTGTCTCCTTGATAACCACCGCGGA
AGAAACGTCGCCAGTTTATCTTTCACTCAAATTCAACCAGAGATATATAGAGAGAGAGAGATGTTGAAGAAGAGGCGGAGATCAAAGGCCGTTTCGGAGTTCTGGAAGCT
CTCCATTGCCGCCGATGACTTCCACCTTCCATCCTCGCCGTCCGATATCAACAGCGATGATTACATAGGCGTGGAGAGTTGTGTCGATTTAAAAGACAACGACACGGCAG
CCGACATAAGTCCCCTGGCGAGCTTCCCCGAGGGAGGAAATAGCAAGAGGGACATCAAAACGTCGTGGATGGAGAGAAAAGATCAGAAAAACTATCCCCCACCAATCCCA
TTATTGGTTCGCACTGAGAATCTGGGTTCCCACATACCATGGGTGATGAAACGGCAGTACACAGGCGATGGACGGCTCATACTGACAGAGGAGAAAGTGAAACACCACGA
GTTCTTCCGTGCCCACAGATCCGATGGACGCCTGATGCTACAGCTGGTGACCATGGACGACCAGGAGTTGGATGAGGACGGCGATGAGGAGGAGAAGAAGGAGGAGTGCA
CGGAGGCGGGAGGGAGTGAAGAAGGGGGAAAATGGTGTAAGTATGAGAACGTAAGAGACAGAGATGCAGCGTTTATGTTCGGAGTGGAAGTGACTGCAGGAAGCTTGAGG
AGTGTTCGAGGGTAA
Protein sequenceShow/hide protein sequence
MLKKRRRSKAVSEFWKLSIAADDFHLPSSPSDINSDDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRTENLGSHIPWVMKRQY
TGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGKWCKYENVRDRDAAFMFGVEVTAGSLRSVRG