CuGenDBv2

Gene ID	Carg01494
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transmembrane protein 50A-like
Genome location	Carg_Chr15:3679391..3683406
RNA-Seq Expression	Carg01494
Synteny	Carg01494
Gene Ontology terms	GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
InterPro domains	IPR007919 - Uncharacterised protein family UPF0220

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7016525.1 hypothetical protein SDJN02_21634 [Cucurbita argyrosperma subsp. argyrosperma]

9.6e-103

100

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_008460472.1 PREDICTED: transmembrane protein 50A [Cucumis melo]

4.8e-62

69.63

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEW                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                                     RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_022938351.1 transmembrane protein 50A-like [Cucurbita moschata]

7.5e-63

70.68

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEW                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                                     RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_022993057.1 transmembrane protein 50A [Cucurbita maxima]

2.2e-62

70.16

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFAS AALMFNCVRREDIDYSPYEEGEW                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                                     RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_038874577.1 transmembrane protein 50A [Benincasa hispida]

6.3e-62

69.11

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFAS AALMFNCVR+EDIDYSPYEEGEW                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                                     RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CCJ8 transmembrane protein 50A

2.3e-62

69.63

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEW                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                                     RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1CJN8 transmembrane protein 50A

1.2e-61

68.59

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEW                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                                     RLKLWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1FCW9 transmembrane protein 50A-like

3.6e-63

70.68

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEW                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                                     RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1JRP9 transmembrane protein 50A

1.1e-62

70.16

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFAS AALMFNCVRREDIDYSPYEEGEW                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                                     RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

D6BRE9 Transmembrane protein 50a, putative

3.7e-60

65.97

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELW+IFGPGVAGAVFG GWWFW+DAVVCSSV VSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEW                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                                     RLKLWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTG AGVLQCVFVL+SGLIYWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

SwissProt top hits

e value

%identity

Alignment

O95807 Transmembrane protein 50A

4.8e-04

24.02

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Query:  AGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCCAYSSVANVLVIC
        AG +F  GWW  +DA V       F H  +  G+ A+IA LM N V    +    Y EG                                         
Subjt:  AGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCCAYSSVANVLVIC

Query:  LLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
           CL              ++WLF  ++++F SL AS+ +L    V K    V+ G+A   Q  F+   GL++    +E
Subjt:  LLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Q9CXL1 Transmembrane protein 50A

2.1e-04

23.83

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVS
        MD  E  +      AG +F  GWW  +DA V       F H  +  G+ A+IA LM N V    +    Y EG                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVS

Query:  CCAYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                         CL              ++WLF  ++++F SL AS+ +L    V K    V+ G+A   Q  F+   GL++    +E
Subjt:  CCAYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G36980.1 unknown protein

4.8e-60

61.78

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Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC
        MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V FVHYLPGIFAS+ ALMFNCVR+EDIDYSPY+EGEW                           
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCC

Query:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
                                     RLKLWLF AYVV+FVSLAASVGLLIQDSVVKTGPS WTGVAGV QCVFVL+SGL+YWTSHSE
Subjt:  AYSSVANVLVICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Sequences

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CDS sequence

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ATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCTGGCGTCGCCGGAGCTGTGTTTGGTGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCAGT
TTCCTTCGTCCACTACCTCCCAGGTATTTTTGCTTCTATTGCGGCTTTGATGTTCAATTGCGTTCGCAGAGAAGACATCGATTATTCTCCATATGAGGAGGGCGAATGGA
GAATATCGGATGCACTTCGATTCAAACCTTGCGTGTTTGCAATAGAAGTTGGGGCAGCAGAAGCCAGAGTTTCCTGCTGTGCTTACAGCTCAGTTGCAAATGTTCTGGTT
ATCTGCTTATTGAAGTGTCTTTCTGTAATTAACTATACTGACGCTTCCCTCGACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGC
AGCATCAGTGGGACTCTTGATACAAGATTCAGTAGTAAAAACAGGGCCATCAGTGTGGACAGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGA
TTTACTGGACTTCTCACTCGGAGTAA

mRNA sequence

Show/hide mRNA sequence

TGAAGATCGATGGGAGCTGTGCTGTCATTCAGTTCATATTAGCTTTTCTAAATCGGCCCGTCTCAAATCTCTAGCGCAAGGAGAAGGCAAAAGAAAGGAGCCACAAATGG
ATTTGGCGGAGCTGTGGTCAATTTTCGGCCCTGGCGTCGCCGGAGCTGTGTTTGGTGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCAGTTTCC
TTCGTCCACTACCTCCCAGGTATTTTTGCTTCTATTGCGGCTTTGATGTTCAATTGCGTTCGCAGAGAAGACATCGATTATTCTCCATATGAGGAGGGCGAATGGAGAAT
ATCGGATGCACTTCGATTCAAACCTTGCGTGTTTGCAATAGAAGTTGGGGCAGCAGAAGCCAGAGTTTCCTGCTGTGCTTACAGCTCAGTTGCAAATGTTCTGGTTATCT
GCTTATTGAAGTGTCTTTCTGTAATTAACTATACTGACGCTTCCCTCGACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCA
TCAGTGGGACTCTTGATACAAGATTCAGTAGTAAAAACAGGGCCATCAGTGTGGACAGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTA
CTGGACTTCTCACTCGGAGTAAGACGTAAGAGGCTGAAGAATTACCAACTTCATATAGCTCCAGTGGACTGCAGACTACAGTGTGAGTCATTTGTGTGTATCATTTGACT
TTTCCAACTATGGAACCAAAGGGCTTTTCTACTTGTAAATGTCATGTTAATTTCAAGCTGAAACCATGTCTATATGTCTTTATGCATTCAATATAAGTGAGTCAGATATT
CAATCTTTCAGCCATTTCAGCTTTGTTGGTTTCATTTTTGTTCTTTTTTCCCTTCAAAACTGTTGTGAATTGAAGAAAATGAAAATATATATATAAACTTCGATAAAGTT
CGATACAACCCGTTTACAATAAACTTTGATAAAGCCATTGTAATTTGAAAAAATACCAAGTCCATTTA

Protein sequence

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MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRISDALRFKPCVFAIEVGAAEARVSCCAYSSVANVLV
ICLLKCLSVINYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Carg01494 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome