; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg01500 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01500
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S13, chloroplastic-like
Genome locationCarg_Chr15:3627463..3631880
RNA-Seq ExpressionCarg01500
SyntenyCarg01500
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR018269 - Ribosomal protein S13, conserved site
IPR019980 - Ribosomal protein S13, bacterial-type
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578996.1 Small ribosomal subunit protein S13, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]5.5e-11099.04Show/hide
Query:  MDQVILEEPTDVTRFLNGLSRASGLDLKTVGFVWPNNTSALSFLRRLNSLFRFTGTLLRRIMFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNK
        MDQVILEEPTDVTRFLNGLSRASGLDLKTVGFVWPNNTSAL+FLRRLNSLFRFTGTLLRRIMFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNK
Subjt:  MDQVILEEPTDVTRFLNGLSRASGLDLKTVGFVWPNNTSALSFLRRLNSLFRFTGTLLRRIMFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNK

Query:  PLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQI
        PLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQI
Subjt:  PLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQI

Query:  GSGKKKASQ
        GSGKKKAS+
Subjt:  GSGKKKASQ

KAG7016519.1 30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-209100Show/hide
Query:  MDQVILEEPTDVTRFLNGLSRASGLDLKTVGFVWPNNTSALSFLRRLNSLFRFTGTLLRRIMFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNK
        MDQVILEEPTDVTRFLNGLSRASGLDLKTVGFVWPNNTSALSFLRRLNSLFRFTGTLLRRIMFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNK
Subjt:  MDQVILEEPTDVTRFLNGLSRASGLDLKTVGFVWPNNTSALSFLRRLNSLFRFTGTLLRRIMFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNK

Query:  PLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQI
        PLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQI
Subjt:  PLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQI

Query:  GSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITK
        GSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITK
Subjt:  GSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITK

Query:  DLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
        DLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Subjt:  DLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

XP_022939154.1 30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata]3.3e-17198.43Show/hide
Query:  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKK
        MFGVRRSLGVVSNDLLHRFRSLSI SIHIKAG+EIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKK
Subjt:  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKK

Query:  DIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKAS--QEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRV
        DIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKAS  +EIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRV
Subjt:  DIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKAS--QEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRV

Query:  GGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN
        GGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN
Subjt:  GGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN

Query:  CRTLKGKKVAIAGKKKAPR
        CRTLKGKKVAIAGKKKAPR
Subjt:  CRTLKGKKVAIAGKKKAPR

XP_023550656.1 30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo]8.7e-17298.43Show/hide
Query:  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKK
        MFGVRRSLG+VSNDLLHRFRSLSIESIHIKAG+EIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKK
Subjt:  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKK

Query:  DIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKAS--QEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRV
        DIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKAS  +EIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRV
Subjt:  DIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKAS--QEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRV

Query:  GGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN
        GGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN
Subjt:  GGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN

Query:  CRTLKGKKVAIAGKKKAPR
        CRTLKGKKVAIAGKKKAPR
Subjt:  CRTLKGKKVAIAGKKKAPR

XP_037492560.1 uncharacterized protein LOC105638882 [Jatropha curcas]4.7e-10160.51Show/hide
Query:  LRRIMFGVRRSLGVVSN---DLLHR--FRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVG
        LRR+  G R S+G++SN    LL    FR   ++ + I    EIP+ K L+YALQ+I GIGR RA ++L +L LENK AKDLT  E+  L +E+SKY++G
Subjt:  LRRIMFGVRRSLGVVSN---DLLHR--FRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVG

Query:  HELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGS--GKKKASQEI-----------------------MAHTLALPVAPSLSLI
         +L + VK DI+RL  IQCHRG  H   +PCRGQRTKTNART K ++ G+  G+   ++ I                       MA  LA+PVAPSLS+I
Subjt:  HELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGS--GKKKASQEI-----------------------MAHTLALPVAPSLSLI

Query:  CNSRTSNPLSNAISFPI-SNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRF
        CN+R SN L   +S PI S P+V GL I+C RVGGVEIPNNKRV YSLQYIHGIGR+ A++IL DL+ ENKITKDL+EEELI++RDEVSKYMIEGDLRRF
Subjt:  CNSRTSNPLSNAISFPI-SNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRF

Query:  NALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
        NAL IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGK+V +AGKKKAPR
Subjt:  NALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

TrEMBL top hitse value%identityAlignment
A0A1Q3C7S2 Ribosomal_S13 domain-containing protein8.4e-8855.14Show/hide
Query:  MFGVRRSLGVVSNDLLHRFRSLSIESIHIK----AGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNK
        M GVR S+G +S+  L    + S   + ++       EIPDNK L+ ALQ+I+GIGR++A ++L +L++ENKL ++L+ RE+  L DE+S+Y++G +L +
Subjt:  MFGVRRSLGVVSNDLLHRFRSLSIESIHIK----AGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNK

Query:  CVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCV
        C++ DI RL  IQC+RGIRH +GLPCRGQRT TNART K K+                                                 V  L I+C 
Subjt:  CVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCV

Query:  RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK
        RVGGVEIPNNKRV YSLQYIHGIGR  +++IL DLN+ENKITKDL+EEEL+ IRDEVSKYMIEG+L+RFN L I RLKEIQCYRGIRHI+GLPCRGQRTK
Subjt:  RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK

Query:  NNCRTLKGKKVAIAGKKKAPR
        NNCRTLKGK+VAIAGKKKAPR
Subjt:  NNCRTLKGKKVAIAGKKKAPR

A0A498J382 ABC transporter domain-containing protein2.8e-9148.66Show/hide
Query:  FRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGE
        F  + ++ ++I+AG+EIPDNKPLKYALQYI GIGR+RA  +++EL++ NK AKDLT+RE+V + DEISKY+VG EL   V++DI R++ IQC++GIRH +
Subjt:  FRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGE

Query:  GLPCRGQRTKTNARTMKSK-----------------------------------------------------------QIGSGKKKA-------------
         LPCRGQRT TNART K+                                                            ++  G   A             
Subjt:  GLPCRGQRTKTNARTMKSK-----------------------------------------------------------QIGSGKKKA-------------

Query:  -----------------------------------------------------SQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNP-RVPGLQ
                                                             S  +MA TLA+P+APSL +ICN R SNPLSN +SFPI  P +V GL 
Subjt:  -----------------------------------------------------SQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNP-RVPGLQ

Query:  IKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRG
        IKCVRVGGVEIPNNKRV YSLQY+HGIGR  A+ IL DLN+ENKITKDL+EEEL  IRDEVSKYMIEGDLRRFNAL IRRLKEIQCYRGIRH QGLPCRG
Subjt:  IKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRG

Query:  QRTKNNCRTLK
        QRTKNN RTLK
Subjt:  QRTKNNCRTLK

A0A6J1FGA3 30S ribosomal protein S13, chloroplastic-like1.6e-17198.43Show/hide
Query:  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKK
        MFGVRRSLGVVSNDLLHRFRSLSI SIHIKAG+EIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKK
Subjt:  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKK

Query:  DIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKAS--QEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRV
        DIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKAS  +EIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRV
Subjt:  DIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKAS--QEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRV

Query:  GGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN
        GGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN
Subjt:  GGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN

Query:  CRTLKGKKVAIAGKKKAPR
        CRTLKGKKVAIAGKKKAPR
Subjt:  CRTLKGKKVAIAGKKKAPR

A0A6J1JXU5 30S ribosomal protein S13, chloroplastic-like2.1e-86100Show/hide
Query:  MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIR
        MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIR
Subjt:  MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIR

Query:  DEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
        DEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Subjt:  DEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

B9RJA5 30S ribosomal protein S13, putative2.1e-8653.99Show/hide
Query:  MFGVRRSLGVVSN---------DLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVG
        MFG R S+G++++           + +FR   ++ + +    EIPD+K L++ALQ+I GIGR RA Q+L +L LENK  KDLT  E+  L +E+SKY++G
Subjt:  MFGVRRSLGVVSN---------DLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVG

Query:  HELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGL
         EL +CV+ DI RL  IQC+RG  H   LPCRGQ T+TNART K  +          + +A                                   V GL
Subjt:  HELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGL

Query:  QIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCR
         I+C RVGGVEIPNNKR+ YSLQYIHG+GR+ A++IL DL++ENKITK+L+EEELI++RDEVSKYMIEGDLRRFNAL IRRLKEIQCYRG+RHIQGLPCR
Subjt:  QIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCR

Query:  GQRTKNNCRTLKGKKVAIAGKKKAPR
        GQRTKNNCRTLKGK+V +AGKKK PR
Subjt:  GQRTKNNCRTLKGKKVAIAGKKKAPR

SwissProt top hitse value%identityAlignment
B1VAC3 30S ribosomal protein S131.9e-2852.94Show/hide
Query:  RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRT
        R+ G++IP++KRV+ +L YI+G+G+  ++KIL +LN+ + I  K+L E++L S+R E++KY +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T
Subjt:  RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRT

Query:  KNNCRTLKGKKVAIAGKKK
        +NN  T+KGK  +IAGKKK
Subjt:  KNNCRTLKGKKVAIAGKKK

P42732 30S ribosomal protein S13, chloroplastic9.6e-6575.74Show/hide
Query:  MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELIS
        MA  +A+PVA SLSLICN   SNPLS N ++ P SN P    L I+C RVGGVEIP NKR+ YSLQYIHGIGR  A++IL DL +ENKITKD+AEEELI 
Subjt:  MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELIS

Query:  IRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
        +RDEVSKYMIEGDLRRFNALAI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Subjt:  IRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

P82163 30S ribosomal protein S13, chloroplastic3.1e-6373.96Show/hide
Query:  MAHTLALPVAPSLSLICNSRTSNPL-SNAISF-PISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELIS
        MAHTLA PVAPS+SLICN++ S  L S++++F P++     GL IKCVRVG VEIPNNKRV YSLQYIHGIGR+ A++IL DL +ENK+TK+L+E+EL+ 
Subjt:  MAHTLALPVAPSLSLICNSRTSNPL-SNAISF-PISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELIS

Query:  IRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVAIAGKKKAP
        +RDEV+KYMIEGDLRRFNA+AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK+V IAGKKK P
Subjt:  IRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVAIAGKKKAP

Q8LPW2 Small ribosomal subunit protein S13, mitochondrial1.5e-3350.68Show/hide
Query:  MFGVRRSLGVVSNDLLHRF--RSLSIESIHIKAGV--EIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNK
        MFG  R L  V+  L        + +++I+I  GV  EIPDNK L YALQ ++GIGRS+A  ++AEL +ENK  KDL+KRE+  + + +SKY++G++L K
Subjt:  MFGVRRSLGVVSNDLLHRF--RSLSIESIHIKAGV--EIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNK

Query:  CVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKK
        CV++D+ RL  IQC+RGIRH + LPCRGQRT TNART +S++  SG +
Subjt:  CVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKK

Q9CA19 Small ribosomal subunit protein S13, mitochondrial1.2e-3047.3Show/hide
Query:  RTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALA
        R++  L +     + N    GL+++ +RVG  E+PNNK +   LQ ++GIGR  + ++L  L + NK+ +DL  +ELI +R+EV ++    +LRR     
Subjt:  RTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALA

Query:  IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
        I+RL E+ CYRG RH  GLPCRGQRT  N RT KGK VAIAGKKKAPR
Subjt:  IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

Arabidopsis top hitse value%identityAlignment
AT1G22780.1 Ribosomal protein S13/S18 family3.6e-0631.11Show/hide
Query:  IPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEIS---------------------KY--MVGHELNKCVKKDIDRLQAIQC
        +   + + +AL  I GIGR  A  V  +  ++ NK A +L+  EI  L   ++                     KY  +V + L+  ++ D++RL+ I+ 
Subjt:  IPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEIS---------------------KY--MVGHELNKCVKKDIDRLQAIQC

Query:  HRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKK
        HRG+RH  GL  RGQ TKT  R  + K +G  KK+
Subjt:  HRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKK

AT1G34030.1 Ribosomal protein S13/S18 family3.6e-0631.11Show/hide
Query:  IPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEIS---------------------KY--MVGHELNKCVKKDIDRLQAIQC
        +   + + +AL  I GIGR  A  V  +  ++ NK A +L+  EI  L   ++                     KY  +V + L+  ++ D++RL+ I+ 
Subjt:  IPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEIS---------------------KY--MVGHELNKCVKKDIDRLQAIQC

Query:  HRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKK
        HRG+RH  GL  RGQ TKT  R  + K +G  KK+
Subjt:  HRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKK

AT1G77750.1 Ribosomal protein S13/S18 family8.4e-3247.3Show/hide
Query:  RTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALA
        R++  L +     + N    GL+++ +RVG  E+PNNK +   LQ ++GIGR  + ++L  L + NK+ +DL  +ELI +R+EV ++    +LRR     
Subjt:  RTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALA

Query:  IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
        I+RL E+ CYRG RH  GLPCRGQRT  N RT KGK VAIAGKKKAPR
Subjt:  IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

AT5G14320.1 Ribosomal protein S13/S18 family6.8e-6675.74Show/hide
Query:  MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELIS
        MA  +A+PVA SLSLICN   SNPLS N ++ P SN P    L I+C RVGGVEIP NKR+ YSLQYIHGIGR  A++IL DL +ENKITKD+AEEELI 
Subjt:  MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELIS

Query:  IRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
        +RDEVSKYMIEGDLRRFNALAI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Subjt:  IRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

AT5G14320.2 Ribosomal protein S13/S18 family1.6e-3569.3Show/hide
Query:  MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELIS
        MA  +A+PVA SLSLICN   SNPLS N ++ P SN P    L I+C RVGGVEIP NKR+ YSLQYIHGIGR  A++IL DL +ENKITKD+AEEELI 
Subjt:  MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELIS

Query:  IRDEVSKYMIEGDL
        +RDEVSKYMIEGDL
Subjt:  IRDEVSKYMIEGDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAAGTAATTCTAGAAGAGCCCACGGATGTAACTCGTTTTCTTAATGGGCTTTCTCGGGCGAGCGGGTTGGATTTGAAAACCGTGGGCTTCGTTTGGCCTAACAA
TACTTCGGCTCTCTCTTTCCTTCGCCGTCTGAATTCTCTCTTCCGCTTCACTGGAACCCTCCTCCGCCGAATAATGTTCGGAGTTCGTCGTTCCCTGGGGGTTGTCTCCA
ATGATCTTCTTCATCGCTTCCGATCATTATCAATCGAGTCGATTCACATAAAAGCGGGTGTGGAGATTCCCGATAACAAGCCGCTTAAATATGCGCTTCAGTACATTAAT
GGAATTGGCCGATCGAGAGCGCCGCAAGTTCTTGCTGAGCTCCACTTGGAGAACAAGCTTGCCAAGGATTTGACTAAACGAGAGATTGTTGTTCTTGCGGACGAAATTTC
TAAGTACATGGTCGGACATGAGTTGAATAAGTGTGTTAAGAAGGACATTGATAGATTGCAGGCAATTCAGTGCCACAGAGGGATTAGGCATGGTGAAGGATTGCCATGTC
GAGGCCAACGAACAAAGACCAATGCTAGGACTATGAAGTCGAAGCAGATCGGTTCTGGAAAGAAGAAAGCTTCTCAGGAGATAATGGCGCACACTTTAGCATTGCCCGTC
GCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGT
CCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACG
TGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCC
ATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAA
GGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCAAGTAATTCTAGAAGAGCCCACGGATGTAACTCGTTTTCTTAATGGGCTTTCTCGGGCGAGCGGGTTGGATTTGAAAACCGTGGGCTTCGTTTGGCCTAACAA
TACTTCGGCTCTCTCTTTCCTTCGCCGTCTGAATTCTCTCTTCCGCTTCACTGGAACCCTCCTCCGCCGAATAATGTTCGGAGTTCGTCGTTCCCTGGGGGTTGTCTCCA
ATGATCTTCTTCATCGCTTCCGATCATTATCAATCGAGTCGATTCACATAAAAGCGGGTGTGGAGATTCCCGATAACAAGCCGCTTAAATATGCGCTTCAGTACATTAAT
GGAATTGGCCGATCGAGAGCGCCGCAAGTTCTTGCTGAGCTCCACTTGGAGAACAAGCTTGCCAAGGATTTGACTAAACGAGAGATTGTTGTTCTTGCGGACGAAATTTC
TAAGTACATGGTCGGACATGAGTTGAATAAGTGTGTTAAGAAGGACATTGATAGATTGCAGGCAATTCAGTGCCACAGAGGGATTAGGCATGGTGAAGGATTGCCATGTC
GAGGCCAACGAACAAAGACCAATGCTAGGACTATGAAGTCGAAGCAGATCGGTTCTGGAAAGAAGAAAGCTTCTCAGGAGATAATGGCGCACACTTTAGCATTGCCCGTC
GCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGT
CCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACG
TGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCC
ATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAA
GGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGCCTTTGCCATTGAATCTCTTGTAAAAGCTTAGAGACGTATTGTTTAAACTCTGGATTTGCATCTGATTTCC
TCATGAAAATACTTTTGTGTTATTGATGTGTCATGTTCTATCTTACAGATGCGCTCACCCTCTTCAAATGCTAGAGTAGTTAACGAGGGGTCCATTATTATAACTCATTT
TACTAACACAATCTTTTCTATTGGATCTCTGGGGACGGTGAACTAGTCTAAACCATCAACAAGATTGCTAATAAAATGATATGCTCTGTGGAGTTATTGTTCGTCAGCGC
CAGGCCTTGGACGTGGCATCAATTTGAATAAAGAGGCTTTGGGGAGAAATAACCGATTTCAATCGCGAAAAAGTAAGTGGGTTTTAATTTAAAATTTATTGAATCCAAAA
ATCTAAAAGGATGATTAGGTATCCATGATTAGATTACTATACTATGTTCTTATTGATGATATGTTCATGCATGATATGTTTATTTTGTTATATGGGAATGATTAAGAGTT
AGTTGGTGAACTTGATTCGATCGTTGGGTATTTTTAACATTTTTAGAAGTAACTATGATGACTTGTATATTGTGGAGATGATTATAACTTCTTTAACTAATTTCTTATTA
GAGAACGATCCCAATTCTACAATAATACATGAATTTGTAGAACTAGAGTTAGAGCTCTTAAATGCATGAATTTTATTTTAGGACCCTACAACAACTCATGTAGAAGAACA
CGGAACATGAGAACTCGA
Protein sequenceShow/hide protein sequence
MDQVILEEPTDVTRFLNGLSRASGLDLKTVGFVWPNNTSALSFLRRLNSLFRFTGTLLRRIMFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYIN
GIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKASQEIMAHTLALPV
APSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALA
IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR