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Carg01525 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01525
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA polymerase II transcription factor B subunit 4
Genome locationCarg_Chr15:3501602..3502227
RNA-Seq ExpressionCarg01525
SyntenyCarg01525
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
GO:0005675 - transcription factor TFIIH holo complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004600 - TFIIH subunit Tfb4/GTF2H3
IPR036465 - von Willebrand factor A-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578972.1 LysM domain-containing GPI-anchored protein 1, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4378.95Show/hide
Query:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
        MASAPSKLYA                  + S+P S  + S VLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
Subjt:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE

Query:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
        FMIGDEQSIKEDPRGGTMSSLLSGSLSMALC I
Subjt:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
KAG7016494.1 RNA polymerase II transcription factor B subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-61100Show/hide
Query:  MASAPSKLYAGSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPRGGT
        MASAPSKLYAGSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPRGGT
Subjt:  MASAPSKLYAGSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPRGGT

Query:  MSSLLSGSLSMALCCILVDDFWC
        MSSLLSGSLSMALCCILVDDFWC
Subjt:  MSSLLSGSLSMALCCILVDDFWC
XP_022938728.1 RNA polymerase II transcription factor B subunit 4 [Cucurbita moschata]4.2e-4378.2Show/hide
Query:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
        MASAPSKLYA                  + S+P S  + S VLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
Subjt:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE

Query:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
        FMIGDEQSI+EDPRGGTMSSLLSGSLSMALC I
Subjt:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
XP_022993825.1 RNA polymerase II transcription factor B subunit 4 [Cucurbita maxima]1.6e-4278.63Show/hide
Query:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
        MASAPSKLYA                  + S+P S  + S VLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
Subjt:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE

Query:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALC
        FMIGDEQSIKEDPR GTMSSLLSGSLSMALC
Subjt:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALC
XP_023550583.1 RNA polymerase II transcription factor B subunit 4 [Cucurbita pepo subsp. pepo]1.5e-4378.95Show/hide
Query:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
        MASAPSKLYA                  + S+P S  + S VLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
Subjt:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE

Query:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
        FMIGDEQSIKEDPRGGTMSSLLSGSLSMALC I
Subjt:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
TrEMBL top hitse value%identityAlignment
A0A0A0LMM2 Uncharacterized protein1.1e-4175.19Show/hide
Query:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
        MASAPSKLYA                  +S++P S  + S VLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEE
Subjt:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE

Query:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
        F+IGDEQSIKEDP+GGTMSSLLSGSLSMALC I
Subjt:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
A0A1S3B4H7 LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 45.0e-4275.94Show/hide
Query:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
        MASAPSKLYA                  +SS+P S  + S VLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEE
Subjt:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE

Query:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
        F+IGDEQSIKEDP+GGTMSSLLSGSLSMALC I
Subjt:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
A0A5A7U2L2 RNA polymerase II transcription factor B subunit 45.0e-4275.94Show/hide
Query:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
        MASAPSKLYA                  +SS+P S  + S VLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEE
Subjt:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE

Query:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
        F+IGDEQSIKEDP+GGTMSSLLSGSLSMALC I
Subjt:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
A0A6J1FJQ6 RNA polymerase II transcription factor B subunit 42.0e-4378.2Show/hide
Query:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
        MASAPSKLYA                  + S+P S  + S VLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
Subjt:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE

Query:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
        FMIGDEQSI+EDPRGGTMSSLLSGSLSMALC I
Subjt:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCI
A0A6J1JZK7 RNA polymerase II transcription factor B subunit 47.8e-4378.63Show/hide
Query:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
        MASAPSKLYA                  + S+P S  + S VLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE
Subjt:  MASAPSKLYA-----------------GSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEE

Query:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALC
        FMIGDEQSIKEDPR GTMSSLLSGSLSMALC
Subjt:  FMIGDEQSIKEDPRGGTMSSLLSGSLSMALC
SwissProt top hitse value%identityAlignment
Q8LF41 General transcription and DNA repair factor IIH subunit TFB43.2e-1751.33Show/hide
Query:  LYAGSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGR---MPALCTRLLNNLEEFMIGDEQSIKEDPRGGTM-SS
        L+  ++SI  S  + S VLAFLN++L LNQLN+VVVI TGY+SC Y+Y+SS  SN    +     MPA+   LL  LEEF+  DE+  KE+     + S 
Subjt:  LYAGSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGR---MPALCTRLLNNLEEFMIGDEQSIKEDPRGGTM-SS

Query:  LLSGSLSMALCCI
        LLSGSLSMALC I
Subjt:  LLSGSLSMALCCI
Arabidopsis top hitse value%identityAlignment
AT1G18340.1 basal transcription factor complex subunit-related2.3e-1851.33Show/hide
Query:  LYAGSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGR---MPALCTRLLNNLEEFMIGDEQSIKEDPRGGTM-SS
        L+  ++SI  S  + S VLAFLN++L LNQLN+VVVI TGY+SC Y+Y+SS  SN    +     MPA+   LL  LEEF+  DE+  KE+     + S 
Subjt:  LYAGSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGR---MPALCTRLLNNLEEFMIGDEQSIKEDPRGGTM-SS

Query:  LLSGSLSMALCCI
        LLSGSLSMALC I
Subjt:  LLSGSLSMALCCI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGGTTCTTCTTCAATTCCTCTCTCCTTTCATATGGATTCTCAGGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCA
ACTTAATGAGGTTGTGGTCATTGGTACCGGATATGCTTCATGCAAGTATCTATACAACTCGTCTTCTTACTCAAATCGTAGCCTTGAAGATGGCAGAATGCCTGCACTTT
GCACTCGTTTATTGAATAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCAATCAAGGAAGATCCCAGAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCC
ATGGCTTTGTGTTGTATCCTTGTTGATGATTTTTGGTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGGTTCTTCTTCAATTCCTCTCTCCTTTCATATGGATTCTCAGGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCA
ACTTAATGAGGTTGTGGTCATTGGTACCGGATATGCTTCATGCAAGTATCTATACAACTCGTCTTCTTACTCAAATCGTAGCCTTGAAGATGGCAGAATGCCTGCACTTT
GCACTCGTTTATTGAATAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCAATCAAGGAAGATCCCAGAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCC
ATGGCTTTGTGTTGTATCCTTGTTGATGATTTTTGGTGCTGA
Protein sequenceShow/hide protein sequence
MASAPSKLYAGSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPRGGTMSSLLSGSLS
MALCCILVDDFWC