CuGenDBv2

Gene ID	Carg01601
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	U6 snRNA-associated Sm-like protein LSm3
Genome location	Carg_Chr15:3058309..3058874
RNA-Seq Expression	Carg01601
Synteny	Carg01601
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0033962 - cytoplasmic mRNA processing body assembly (biological process) GO:0000932 - P-body (cellular component) GO:0005688 - U6 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:1990726 - Lsm1-7-Pat1 complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR040002 - U6 snRNA-associated Sm-like protein Lsm3

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7016418.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.6e-35

100

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Query:  IYLSWSSNYFLLPDYHDVLQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
        IYLSWSSNYFLLPDYHDVLQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Subjt:  IYLSWSSNYFLLPDYHDVLQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

KAG9455091.1 hypothetical protein H6P81_007995 [Aristolochia fimbriata]

2.6e-22

94.92

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT
        L AYDQHLNMILGDVEEI+TTVEIDDETYEEIVRTSRRT+PFLFVRGDGVILVSPPLRT
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT

XP_009775794.1 PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nicotiana sylvestris]

1.5e-22

96.67

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
        L AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRTV
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

XP_016470505.1 PREDICTED: sm-like protein LSM3A [Nicotiana tabacum]

2.0e-22

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
        L AYDQHLNMILGDVEEIVTT+EIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRTV
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

XP_022133461.1 sm-like protein LSM3A [Momordica charantia]

6.9e-23

98.33

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
        L AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

TrEMBL top hits

e value

%identity

Alignment

A0A1U7WMA2 U6 snRNA-associated Sm-like protein LSm3

7.4e-23

96.67

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
        L AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRTV
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

A0A4D8YSW8 U6 snRNA-associated Sm-like protein LSm3

2.0e-23

96.67

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Query:  VLQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT
        +LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Subjt:  VLQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT

A0A6J1BV62 U6 snRNA-associated Sm-like protein LSm3

3.3e-23

98.33

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
        L AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

A0A6J1FGZ1 U6 snRNA-associated Sm-like protein LSm3

3.3e-23

98.33

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
        L AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

A0A6J1JZX1 U6 snRNA-associated Sm-like protein LSm3

3.3e-23

98.33

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
        L AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

SwissProt top hits

e value

%identity

Alignment

P62310 U6 snRNA-associated Sm-like protein LSm3

9.7e-20

75.86

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
        L AYDQHLNMILGDVEE VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR

P62311 U6 snRNA-associated Sm-like protein LSm3

9.7e-20

75.86

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
        L AYDQHLNMILGDVEE VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR

Q32PE9 U6 snRNA-associated Sm-like protein LSm3

9.7e-20

75.86

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
        L AYDQHLNMILGDVEE VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR

Q9C6K5 Sm-like protein LSM3B

1.6e-22

86.44

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT
        L A+DQHLNMILGDVEE +TTVEIDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT

Q9LMN4 Sm-like protein LSM3A

6.5e-24

88.14

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT
        L A+DQHLNMILGDVEE++TT+EIDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT

Arabidopsis top hits

e value

%identity

Alignment

AT1G21190.1 Small nuclear ribonucleoprotein family protein

4.6e-25

88.14

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT
        L A+DQHLNMILGDVEE++TT+EIDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT

AT1G76860.1 Small nuclear ribonucleoprotein family protein

1.1e-23

86.44

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Query:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT
        L A+DQHLNMILGDVEE +TTVEIDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Subjt:  LQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT

Sequences

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CDS sequence

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ATTTACCTTTCCTGGAGTTCTAACTACTTTCTGTTGCCTGACTATCATGATGTTTTGCAGGCTTATGATCAACATCTTAATATGATTCTAGGCGATGTTGAAGAAATTGT
TACTACTGTAGAAATTGATGACGAGACTTACGAAGAGATCGTTCGGACATCTAGGCGTACTGTCCCGTTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTC
CACTGAGGACTGTGTAA

mRNA sequence

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Protein sequence

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IYLSWSSNYFLLPDYHDVLQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

Carg01601 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome