CuGenDBv2

Gene ID	Carg01629
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	tRNA pseudouridine(38/39) synthase isoform X1
Genome location	Carg_Chr15:2859493..2860026
RNA-Seq Expression	Carg01629
Synteny	Carg01629
Gene Ontology terms	GO:0001522 - pseudouridine synthesis (biological process) GO:0008033 - tRNA processing (biological process) GO:0003723 - RNA binding (molecular function) GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578858.1 putative F-actin-capping protein subunit beta, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-49

100

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Query:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
        MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
Subjt:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV

Query:  EKTPG
        EKTPG
Subjt:  EKTPG

KAG7016392.1 hypothetical protein SDJN02_21501, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-49

100

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Query:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
        MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
Subjt:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV

Query:  EKTPG
        EKTPG
Subjt:  EKTPG

XP_022938732.1 tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita moschata]

1.9e-47

96.19

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Query:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
        MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQS+LRLLQGRVK LEEENSNLSSRLA+CCCSERRMNFDDGSSSIEKS+KYGSLKDKTTKKKAV
Subjt:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV

Query:  EKTPG
        EKTPG
Subjt:  EKTPG

XP_023551060.1 tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita pepo subsp. pepo]

9.8e-49

98.1

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Query:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
        MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLS+RLA+CCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
Subjt:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV

Query:  EKTPG
        EKTPG
Subjt:  EKTPG

XP_023551064.1 tRNA pseudouridine(38/39) synthase isoform X3 [Cucurbita pepo subsp. pepo]

9.8e-49

98.1

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Query:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
        MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLS+RLA+CCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
Subjt:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV

Query:  EKTPG
        EKTPG
Subjt:  EKTPG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FEX0 tRNA pseudouridine(38/39) synthase isoform X1

9.0e-48

96.19

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Query:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
        MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQS+LRLLQGRVK LEEENSNLSSRLA+CCCSERRMNFDDGSSSIEKS+KYGSLKDKTTKKKAV
Subjt:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV

Query:  EKTPG
        EKTPG
Subjt:  EKTPG

A0A6J1FEX6 tRNA pseudouridine(38/39) synthase isoform X3

9.0e-48

96.19

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Query:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
        MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQS+LRLLQGRVK LEEENSNLSSRLA+CCCSERRMNFDDGSSSIEKS+KYGSLKDKTTKKKAV
Subjt:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV

Query:  EKTPG
        EKTPG
Subjt:  EKTPG

A0A6J1JQK1 tRNA pseudouridine(38/39) synthase isoform X2

4.6e-44

93.33

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Query:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
        MDGAEHSLD+RG TGAMETTSGTDEFQPFD NLI NLQSQLRLLQGRVK LEEENSNLSSRLASC CSERRMNFDDGSSSIEKSKKYGSLKDKTT+KKAV
Subjt:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV

Query:  EKTPG
        EKTPG
Subjt:  EKTPG

A0A6J1JU85 tRNA pseudouridine(38/39) synthase isoform X4

7.1e-45

94.29

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Query:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
        MDGAEHSLD+RG TGAMETTSGTDEFQPFD NLI NLQSQLRLLQGRVKELEEENSNLSSRLASC CSERRMNFDDGSSSIEKSKKYGSLKDKTT+KKAV
Subjt:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV

Query:  EKTPG
        EKTPG
Subjt:  EKTPG

A0A6J1JWD4 tRNA pseudouridine(38/39) synthase isoform X1

7.1e-45

94.29

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Query:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV
        MDGAEHSLD+RG TGAMETTSGTDEFQPFD NLI NLQSQLRLLQGRVKELEEENSNLSSRLASC CSERRMNFDDGSSSIEKSKKYGSLKDKTT+KKAV
Subjt:  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAV

Query:  EKTPG
        EKTPG
Subjt:  EKTPG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGACGGAGCGGAACATTCCCTCGATTACAGAGGAGGTACGGGAGCAATGGAAACGACCTCAGGAACTGACGAGTTTCAACCCTTCGATGGAAACCTAATTGGAAATCT
TCAATCCCAGCTTCGTCTTCTCCAAGGCAGGGTTAAGGAATTAGAGGAGGAAAATTCGAATCTATCCTCTCGACTTGCAAGTTGCTGCTGTTCTGAGAGGAGGATGAACT
TTGACGATGGGAGTAGTTCGATTGAGAAAAGCAAGAAATATGGAAGTCTGAAAGACAAGACTACTAAGAAGAAAGCAGTAGAAAAAACGCCAGGCTAG

mRNA sequence

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Protein sequence

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MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG

Carg01629 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome