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Carg01637 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01637
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionF-box/kelch-repeat protein SKIP6
Genome locationCarg_Chr15:2814384..2816030
RNA-Seq ExpressionCarg01637
SyntenyCarg01637
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016385.1 hypothetical protein SDJN02_21493, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-130100Show/hide
Query:  MLTYLKNTIGYTMKIAGCRSNCRQRTASPTLNLDASLRPTESLSYFNHLGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRK
        MLTYLKNTIGYTMKIAGCRSNCRQRTASPTLNLDASLRPTESLSYFNHLGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRK
Subjt:  MLTYLKNTIGYTMKIAGCRSNCRQRTASPTLNLDASLRPTESLSYFNHLGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRK

Query:  LSRDDMFARYRFPSGRKLIEPRFGTGEEIGLLLIVRLNVPLVPMAVVSMVKFDKKEQWKVATLPSSQNSELPHDKMTPDSFKTGLGNASTVVGSWKSAAK
        LSRDDMFARYRFPSGRKLIEPRFGTGEEIGLLLIVRLNVPLVPMAVVSMVKFDKKEQWKVATLPSSQNSELPHDKMTPDSFKTGLGNASTVVGSWKSAAK
Subjt:  LSRDDMFARYRFPSGRKLIEPRFGTGEEIGLLLIVRLNVPLVPMAVVSMVKFDKKEQWKVATLPSSQNSELPHDKMTPDSFKTGLGNASTVVGSWKSAAK

Query:  RIERIQYHPTSPKAPRPSRSGFMRISLAMNSESVA
        RIERIQYHPTSPKAPRPSRSGFMRISLAMNSESVA
Subjt:  RIERIQYHPTSPKAPRPSRSGFMRISLAMNSESVA
OAY80878.1 F-box/kelch-repeat protein SKIP6 [Ananas comosus]1.1e-0445.95Show/hide
Query:  LGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFARYRFPSGRKLIEPR
        L S I+RRLH IDH+L L++N  P LL   + + +  +Q RE  HH   L KL  D+M A  R PSG +L E R
Subjt:  LGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFARYRFPSGRKLIEPR
TrEMBL top hitse value%identityAlignment
A0A199VV63 F-box/kelch-repeat protein SKIP65.5e-0545.95Show/hide
Query:  LGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFARYRFPSGRKLIEPR
        L S I+RRLH IDH+L L++N  P LL   + + +  +Q RE  HH   L KL  D+M A  R PSG +L E R
Subjt:  LGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFARYRFPSGRKLIEPR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAACATATCTTAAGAATACTATTGGTTACACTATGAAGATTGCAGGGTGTCGATCAAATTGTCGACAAAGAACAGCTTCTCCCACACTAAATCTTGATGCAAGCTT
AAGACCAACGGAATCACTGTCCTACTTCAACCACCTTGGATCCCCGATCGAGCGACGCCTTCACCGCATCGATCACCAGCTGAGTCTTACGACTAATGGATGGCCATTTC
TTCTCAGGTTTGGAGCCCTTCTCTTTAATTTCTTTAACCAAACGAGAGAATTCCCCCACCATGCGAGCCTCTTGAGAAAGCTCAGTCGGGACGACATGTTTGCTCGATAC
CGGTTTCCATCCGGTCGCAAGCTCATTGAACCGAGATTTGGAACTGGTGAAGAAATAGGCCTCCTTCTCATCGTAAGACTCAATGTCCCATTGGTTCCTATGGCAGTGGT
GTCCATGGTCAAGTTCGACAAGAAAGAGCAATGGAAGGTCGCTACTTTGCCATCGTCCCAAAACAGTGAGCTTCCACACGACAAAATGACGCCGGATTCATTCAAAACAG
GGTTAGGCAACGCAAGCACTGTTGTAGGCAGTTGGAAGTCGGCAGCAAAGAGAATCGAACGAATACAATACCACCCGACATCGCCCAAAGCACCAAGACCATCGAGATCC
GGTTTTATGCGAATATCATTGGCTATGAACTCAGAATCAGTAGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAACATATCTTAAGAATACTATTGGTTACACTATGAAGATTGCAGGGTGTCGATCAAATTGTCGACAAAGAACAGCTTCTCCCACACTAAATCTTGATGCAAGCTT
AAGACCAACGGAATCACTGTCCTACTTCAACCACCTTGGATCCCCGATCGAGCGACGCCTTCACCGCATCGATCACCAGCTGAGTCTTACGACTAATGGATGGCCATTTC
TTCTCAGGTTTGGAGCCCTTCTCTTTAATTTCTTTAACCAAACGAGAGAATTCCCCCACCATGCGAGCCTCTTGAGAAAGCTCAGTCGGGACGACATGTTTGCTCGATAC
CGGTTTCCATCCGGTCGCAAGCTCATTGAACCGAGATTTGGAACTGGTGAAGAAATAGGCCTCCTTCTCATCGTAAGACTCAATGTCCCATTGGTTCCTATGGCAGTGGT
GTCCATGGTCAAGTTCGACAAGAAAGAGCAATGGAAGGTCGCTACTTTGCCATCGTCCCAAAACAGTGAGCTTCCACACGACAAAATGACGCCGGATTCATTCAAAACAG
GGTTAGGCAACGCAAGCACTGTTGTAGGCAGTTGGAAGTCGGCAGCAAAGAGAATCGAACGAATACAATACCACCCGACATCGCCCAAAGCACCAAGACCATCGAGATCC
GGTTTTATGCGAATATCATTGGCTATGAACTCAGAATCAGTAGCGTAA
Protein sequenceShow/hide protein sequence
MLTYLKNTIGYTMKIAGCRSNCRQRTASPTLNLDASLRPTESLSYFNHLGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFARY
RFPSGRKLIEPRFGTGEEIGLLLIVRLNVPLVPMAVVSMVKFDKKEQWKVATLPSSQNSELPHDKMTPDSFKTGLGNASTVVGSWKSAAKRIERIQYHPTSPKAPRPSRS
GFMRISLAMNSESVA