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Carg01685 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01685
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionXS domain-containing protein
Genome locationCarg_Chr15:2556355..2558246
RNA-Seq ExpressionCarg01685
SyntenyCarg01685
Gene Ontology termsGO:0031047 - gene silencing by RNA (biological process)
InterPro domainsIPR038588 - XS domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578813.1 hypothetical protein SDJN03_23261, partial [Cucurbita argyrosperma subsp. sororia]4.7e-8988.02Show/hide
Query:  MAPDAKLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEEDKPQVSCSLEFEESWRFNVRNIGYSAKEVRALRQDTVIWVPEILPKEEA
        MAPDAKLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSY                       ESWRFNVRNIGYSAKEVRALRQDTVIWVPEILPKEEA
Subjt:  MAPDAKLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEEDKPQVSCSLEFEESWRFNVRNIGYSAKEVRALRQDTVIWVPEILPKEEA

Query:  VVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNSFLKGEVEE
        VVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNSFLKGEVEE
Subjt:  VVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNSFLKGEVEE

KAG7016337.1 hypothetical protein SDJN02_21445, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-107100Show/hide
Query:  MAPDAKLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEEDKPQVSCSLEFEESWRFNVRNIGYSAKEVRALRQDTVIWVPEILPKEEA
        MAPDAKLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEEDKPQVSCSLEFEESWRFNVRNIGYSAKEVRALRQDTVIWVPEILPKEEA
Subjt:  MAPDAKLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEEDKPQVSCSLEFEESWRFNVRNIGYSAKEVRALRQDTVIWVPEILPKEEA

Query:  VVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNSFLKGEVEE
        VVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNSFLKGEVEE
Subjt:  VVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNSFLKGEVEE

XP_008456586.1 PREDICTED: uncharacterized protein LOC103496499 [Cucumis melo]1.8e-0869.57Show/hide
Query:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE
        ++ LV RVD TE RD +WHLRTGRN+ IG SSHS+GQ+RK+PNYEE
Subjt:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE

XP_022133809.1 uncharacterized protein LOC111006280 [Momordica charantia]5.6e-2666.35Show/hide
Query:  ALRQDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERL
        A+ QDTV WVPE+LPKEEAVV KEDLIIWPPVII+ NI LSHSNPD+ RVVTIEALE+FLRSKNLL+GRVK+ L          ++  A    LTDAERL
Subjt:  ALRQDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERL

Query:  DNSF
           F
Subjt:  DNSF

XP_022133809.1 uncharacterized protein LOC111006280 [Momordica charantia]3.1e-0869.57Show/hide
Query:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE
        ++ L  RVDT ERRDE WHLRTGRN+ + S SHSYGQARK PN+EE
Subjt:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE

XP_022133809.1 uncharacterized protein LOC111006280 [Momordica charantia]1.1e-2465.35Show/hide
Query:  QDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNS
        QDTV WVPE+L KEEAV+ KEDLIIWPPVIIV N+ LSH++PDK RVVTIEALESFLRSKNLL+GRVKM+L          ++       LTDAERL+  
Subjt:  QDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNS

Query:  F
        F
Subjt:  F

XP_023550907.1 uncharacterized protein LOC111808905 [Cucurbita pepo subsp. pepo]1.4e-4094.44Show/hide
Query:  VRALRQDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVP
        +RALRQDTVIWVPE+LPKE+AVVHKEDL+IWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCR KCNGVEVP
Subjt:  VRALRQDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVP

TrEMBL top hitse value%identityAlignment
A0A1S3C369 uncharacterized protein LOC1034964998.8e-0969.57Show/hide
Query:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE
        ++ LV RVD TE RD +WHLRTGRN+ IG SSHS+GQ+RK+PNYEE
Subjt:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE

A0A1S3C369 uncharacterized protein LOC1034964995.1e-2565.09Show/hide
Query:  ALRQDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERL
        AL QDTVIWVPE L KEEAVV KEDLIIWPPVIIV NI +S SNP K +V+TIEALE+FLRSKNLL+GRVKM+L          ++       LTDAERL
Subjt:  ALRQDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERL

Query:  DNSFLK
        D  FL+
Subjt:  DNSFLK

A0A5D3CIK8 XS domain-containing protein8.8e-0969.57Show/hide
Query:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE
        ++ LV RVD TE RD +WHLRTGRN+ IG SSHS+GQ+RK+PNYEE
Subjt:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE

A0A5D3CIK8 XS domain-containing protein2.2e-2362.26Show/hide
Query:  ALRQDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERL
        AL QDTV WVPE L KEEAVV KEDLIIWPPV+IV NI +S SNP K +V+TIEALE+FLRSKNLL+GRVKM+L          ++       LTDAERL
Subjt:  ALRQDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERL

Query:  DNSFLK
        +  FL+
Subjt:  DNSFLK

A0A6J1BX13 uncharacterized protein LOC1110062802.7e-2666.35Show/hide
Query:  ALRQDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERL
        A+ QDTV WVPE+LPKEEAVV KEDLIIWPPVII+ NI LSHSNPD+ RVVTIEALE+FLRSKNLL+GRVK+ L          ++  A    LTDAERL
Subjt:  ALRQDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERL

Query:  DNSF
           F
Subjt:  DNSF

A0A6J1BX13 uncharacterized protein LOC1110062801.5e-0869.57Show/hide
Query:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE
        ++ L  RVDT ERRDE WHLRTGRN+ + S SHSYGQARK PN+EE
Subjt:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE

A0A6J1BX13 uncharacterized protein LOC1110062805.1e-2565.35Show/hide
Query:  QDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNS
        QDTV WVPE+L KEEAV+ KEDLIIWPPVIIV N+ LSH++PDK RVVTIEALESFLRSKNLL+GRVKM+L          ++       LTDAERL+  
Subjt:  QDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNS

Query:  F
        F
Subjt:  F

A0A6J1HC30 uncharacterized protein LOC1114614701.3e-0767.39Show/hide
Query:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE
        ++ L  RVDT ERRDE W LRTGRN+ IGSS HSYGQ R+ PNY+E
Subjt:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE

A0A6J1JSP3 uncharacterized protein LOC1114871814.8e-0765.22Show/hide
Query:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE
        ++ L  RVDT ERRDE W LRTGRN+ IGS+ HSYGQ R+ PNY E
Subjt:  KLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEE

A0A6J1JSP3 uncharacterized protein LOC1114871815.1e-2565.35Show/hide
Query:  QDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNS
        QDTV WVPE+L KEEAV+ KEDLIIWPPVIIV N+ LSH++PDK RVVTIEALESFLRSKNLL+GRVKM+L          ++       LTDAERL+  
Subjt:  QDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNS

Query:  F
        F
Subjt:  F

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCGGACGCGAAGTTGGATTTGGTTCATAGGGTTGATACCACTGAAAGGAGGGACGAGCATTGGCATCTGAGAACTGGCAGGAACGATGTCATTGGGTCAAGTTC
ACATTCTTATGGTCAAGCGAGGAAAATGCCCAACTACGAGGAAGATAAACCTCAAGTCTCATGTTCACTTGAATTTGAAGAAAGCTGGAGGTTTAATGTAAGGAATATTG
GATATTCTGCCAAGGAAGTGAGAGCTCTTCGTCAGGACACTGTAATATGGGTTCCTGAGATCTTGCCAAAGGAAGAAGCAGTGGTTCACAAGGAGGATCTTATCATCTGG
CCTCCTGTTATTATCGTCTGCAATATTTTTCTGTCACACAGCAATCCCGATAAGCGGAGAGTTGTAACGATTGAAGCTCTCGAGTCTTTCTTAAGAAGTAAAAATCTGCT
GAGGGGAAGAGTGAAGATGAATTTGAGGGTGTCCTGCAGATGGAAGTGTAATGGTGTTGAAGTTCCTGCCCACCGTTTCTGGTTGACGGATGCAGAAAGACTCGACAATT
CTTTTCTGAAAGGAGAGGTGGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCGGACGCGAAGTTGGATTTGGTTCATAGGGTTGATACCACTGAAAGGAGGGACGAGCATTGGCATCTGAGAACTGGCAGGAACGATGTCATTGGGTCAAGTTC
ACATTCTTATGGTCAAGCGAGGAAAATGCCCAACTACGAGGAAGATAAACCTCAAGTCTCATGTTCACTTGAATTTGAAGAAAGCTGGAGGTTTAATGTAAGGAATATTG
GATATTCTGCCAAGGAAGTGAGAGCTCTTCGTCAGGACACTGTAATATGGGTTCCTGAGATCTTGCCAAAGGAAGAAGCAGTGGTTCACAAGGAGGATCTTATCATCTGG
CCTCCTGTTATTATCGTCTGCAATATTTTTCTGTCACACAGCAATCCCGATAAGCGGAGAGTTGTAACGATTGAAGCTCTCGAGTCTTTCTTAAGAAGTAAAAATCTGCT
GAGGGGAAGAGTGAAGATGAATTTGAGGGTGTCCTGCAGATGGAAGTGTAATGGTGTTGAAGTTCCTGCCCACCGTTTCTGGTTGACGGATGCAGAAAGACTCGACAATT
CTTTTCTGAAAGGAGAGGTGGAAGAGTGAGTTTTGAGCTGGCTGGCAAAGTGCAAAAATGGCGAAGGTAATGATTCGAAATCCAAGTCCCAATGTTGTTTTCCAGGGGAA
TATTGTGATATTCGAAGGAGAAAATACGATGTCGAAAAATCCATCTATGAGTGAAACCATTATACGGTGCTCCTCACAACATTTCTCGTGTCGAAAAATATCAACCGTGA
CTCGGTCTATGTTTTATCCCGCGTGGGGGAGTGATAATGGTGGGAAACAAAATGGAGGAGGAAATATACCTGGGAATTGCAGAGGATTTGGATGGCGTTGAGTTCAATGC
AAGGAAGTTGAGTATGATAAAGAGCAGCTCAGAAAGGAAATTGTGGAGTTGTAAAATGCTCCCTCCTTTTAGGACATTTATAATTAGCATTTGTCAAAAAGTGGTAATCA
AGCCGTTGCAGACGGATAGACCATGGAGAACAATATTAGTTTTTCTGGTATCCTTACCAGAATACCCTTCAGGAGTTCCACTGATCGTCCTTCCCTCATTCGATCTTTGC
CATCGGTCCTTGAATGCTATTCTTTACCAGAAGCTTTGGACGGAGCGGGACCTGCTTAACAAAAGAAAGGAAGAGGAAGAAGAGACAACCCCAAACAGATAGCAGGGA
Protein sequenceShow/hide protein sequence
MAPDAKLDLVHRVDTTERRDEHWHLRTGRNDVIGSSSHSYGQARKMPNYEEDKPQVSCSLEFEESWRFNVRNIGYSAKEVRALRQDTVIWVPEILPKEEAVVHKEDLIIW
PPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERLDNSFLKGEVEE