CuGenDBv2

Gene ID	Carg01695
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	glycine-rich RNA-binding protein RZ1C-like
Genome location	Carg_Chr15:2472001..2472833
RNA-Seq Expression	Carg01695
Synteny	Carg01695
Gene Ontology terms	GO:0003723 - RNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578802.1 Glycine-rich RNA-binding protein RZ1B, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-53

99.11

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Query:  LSLNISEISLRMLSAGSAKFLKLREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQGIGHETVLQLVVNL
        LSLNISEISLRMLSAGS KFLKLREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQGIGHETVLQLVVNL
Subjt:  LSLNISEISLRMLSAGSAKFLKLREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQGIGHETVLQLVVNL

Query:  GGVEVHFRHVSI
        GGVEVHFRHVSI
Subjt:  GGVEVHFRHVSI

KAG6602289.1 Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-22

56.52

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Query:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS
        +FVGGLS N+SE  L    +   K ++                             +REMHGHEF ERIISVNKAEPKMEGDD EP  RGGGYSSGGRAS
Subjt:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS

Query:  FGRGGDRSVGQDECF
        FGRGGDRSVGQDECF
Subjt:  FGRGGDRSVGQDECF

KAG7016328.1 Glycine-rich RNA-binding protein RZ1B, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.8e-57

100

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Query:  MFVGGLSLNISEISLRMLSAGSAKFLKLREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQGIGHETVLQ
        MFVGGLSLNISEISLRMLSAGSAKFLKLREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQGIGHETVLQ
Subjt:  MFVGGLSLNISEISLRMLSAGSAKFLKLREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQGIGHETVLQ

Query:  LVVNLGGVEVHFRHVSI
        LVVNLGGVEVHFRHVSI
Subjt:  LVVNLGGVEVHFRHVSI

XP_022990423.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima]

3.0e-22

56.52

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Query:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS
        +FVGGLS N+SE  L    +   K ++                             +REMHGHEF ERIISVNKAEPKMEGDD EP  RGGGYSSGGRAS
Subjt:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS

Query:  FGRGGDRSVGQDECF
        FGRGGDRSVGQDECF
Subjt:  FGRGGDRSVGQDECF

XP_023544240.1 glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo]

3.0e-22

56.52

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Query:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS
        +FVGGLS N+SE  L    +   K ++                             +REMHGHEF ERIISVNKAEPKMEGDD EP  RGGGYSSGGRAS
Subjt:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS

Query:  FGRGGDRSVGQDECF
        FGRGGDRSVGQDECF
Subjt:  FGRGGDRSVGQDECF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQB5 Uncharacterized protein

2.6e-19

54.78

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Query:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS
        +FVGGLS NISE  L        K L+                             +REMHG E  ERIISVNKAEPKMEGDD E   RGGGYSSGGRAS
Subjt:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS

Query:  FGRGGDRSVGQDECF
        FGRG DRSVGQDECF
Subjt:  FGRGGDRSVGQDECF

A0A6J1BW59 glycine-rich RNA-binding protein RZ1C-like isoform X2

2.6e-19

84.75

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Query:  LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECF
        +REMHG E  ER ISVNKAEPKMEGDD EP  RGGGYSSGGR SFGRGGDRSVGQDECF
Subjt:  LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECF

A0A6J1BW89 glycine-rich RNA-binding protein RZ1C-like isoform X1

3.0e-20

54.78

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Query:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS
        +FVGGLS NISE  L    +   K L+                             +REMHG E  ER ISVNKAEPKMEGDD EP  RGGGYSSGGR S
Subjt:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS

Query:  FGRGGDRSVGQDECF
        FGRGGDRSVGQDECF
Subjt:  FGRGGDRSVGQDECF

A0A6J1HB93 glycine-rich RNA-binding protein RZ1C-like

1.5e-22

56.52

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Query:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS
        +FVGGLS N+SE  L    +   K ++                             +REMHGHEF ERIISVNKAEPKMEGDD EP  RGGGYSSGGRAS
Subjt:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS

Query:  FGRGGDRSVGQDECF
        FGRGGDRSVGQDECF
Subjt:  FGRGGDRSVGQDECF

A0A6J1JS04 glycine-rich RNA-binding protein RZ1C

1.5e-22

56.52

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Query:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS
        +FVGGLS N+SE  L    +   K ++                             +REMHGHEF ERIISVNKAEPKMEGDD EP  RGGGYSSGGRAS
Subjt:  MFVGGLSLNISEISLRMLSAGSAKFLK-----------------------------LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRAS

Query:  FGRGGDRSVGQDECF
        FGRGGDRSVGQDECF
Subjt:  FGRGGDRSVGQDECF

SwissProt top hits

e value

%identity

Alignment

O22703 Glycine-rich RNA-binding protein RZ1B

2.8e-07

41.54

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Query:  LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQG
        ++ MHG E   ++ISVNKAEPK+ G+D +   +GGGYSS G+ +          +DECF     G
Subjt:  LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQG

Q8RWN5 Glycine-rich RNA-binding protein RZ1C

2.3e-09

55.38

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Query:  LREMHGHEFSERIISVNKAEPKMEGDDAEP-CLRGG---GYSSGGRASFGRGGDRS--VGQDECF
        +REMHG +F +R+ISVN+AEPK+  DD E    RGG   GYS  G+ SFG GG     VG+DECF
Subjt:  LREMHGHEFSERIISVNKAEPKMEGDDAEP-CLRGG---GYSSGGRASFGRGGDRS--VGQDECF

Arabidopsis top hits

e value

%identity

Alignment

AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

2.0e-08

41.54

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Query:  LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQG
        ++ MHG E   ++ISVNKAEPK+ G+D +   +GGGYSS G+ +          +DECF     G
Subjt:  LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQG

AT1G60650.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

2.0e-08

41.54

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Query:  LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQG
        ++ MHG E   ++ISVNKAEPK+ G+D +   +GGGYSS G+ +          +DECF     G
Subjt:  LREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQG

AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

1.6e-10

55.38

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Query:  LREMHGHEFSERIISVNKAEPKMEGDDAEP-CLRGG---GYSSGGRASFGRGGDRS--VGQDECF
        +REMHG +F +R+ISVN+AEPK+  DD E    RGG   GYS  G+ SFG GG     VG+DECF
Subjt:  LREMHGHEFSERIISVNKAEPKMEGDDAEP-CLRGG---GYSSGGRASFGRGGDRS--VGQDECF

Sequences

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CDS sequence

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ATGTTTGTTGGAGGACTCTCATTGAACATCTCGGAGATCAGCTTGAGAATGCTTTCAGCCGGTTCGGCAAAATTCTTGAAGCTCAGAGAGATGCATGGGCATGAGTTTAG
TGAGCGGATTATCTCAGTAAATAAGGCTGAACCTAAGATGGAGGGAGATGATGCAGAGCCATGCCTCAGAGGAGGAGGCTATTCATCTGGTGGTAGAGCTAGTTTTGGGA
GAGGAGGAGATAGATCTGTAGGGCAAGATGAATGCTTCAATTTGGAAGTCCAGGGCATTGGGCACGAGACTGTTCTTCAGTTAGTGGTGAACTTGGGAGGGGTAGAGGTT
CATTTTCGTCACGTCTCGATTTGA

mRNA sequence

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Protein sequence

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MFVGGLSLNISEISLRMLSAGSAKFLKLREMHGHEFSERIISVNKAEPKMEGDDAEPCLRGGGYSSGGRASFGRGGDRSVGQDECFNLEVQGIGHETVLQLVVNLGGVEV
HFRHVSI

Carg01695 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome