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Carg01713 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01713
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor PRE6-like
Genome locationCarg_Chr04:9693509..9694066
RNA-Seq ExpressionCarg01713
SyntenyCarg01713
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601421.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia]2.3e-3998Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNR-RSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNR  SSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNR-RSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

KAG7032204.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-41100Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

XP_022957252.1 transcription factor PRE6-like [Cucurbita moschata]4.3e-3895.96Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRTPRSRR PLPSTTISDHQIADLISKLHQLIPQIRNRR   SSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

XP_022987627.1 transcription factor PRE6-like [Cucurbita maxima]1.1e-3693.94Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRT RSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRR    SSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

XP_023514693.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]1.3e-3793.94Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRTPRSRRSPLPSTTISDHQIADLISKLH+LIPQIRNRR   SSSSTVSASK+LQETCNFIRSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

TrEMBL top hitse value%identityAlignment
A0A6J1DAM4 transcription factor PRE6-like7.9e-3080.81Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R+ RSRRSP+PS  ISD QIADLISKL QLIP+IRN R    SSS VSASKVLQETCN+IRSL+REVDDLSERLSELLASTDPE+AQAAI+RSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

A0A6J1G268 transcription factor PRE6-like1.7e-2776.77Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R+ RSRRS +PS+ ISD QIADLISKL QLIP+IRN R    SSS VSASKVLQETCN+IRSL+REV DLS+RLSELL STDPE+AQAAI+RSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

A0A6J1GYM6 transcription factor PRE6-like2.1e-3895.96Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRTPRSRR PLPSTTISDHQIADLISKLHQLIPQIRNRR   SSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

A0A6J1HXN1 transcription factor PRE6-like1.3e-2776.77Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R+ RSRRS +PS+ ISD QIADLISKL QLIP+IRN R    SSS VSASKVLQETCN+IRSL+REV DLS+RLSELL STDPE+AQAAI+RSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

A0A6J1JAV8 transcription factor PRE6-like5.1e-3793.94Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRT RSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRR    SSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI64.2e-2060.61Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R  RSR+S   S+ I+D QI+DL+SKL  L+P+ R R     S+  V +S+VLQETCN+IRSL +EVDDLSERLSELLA++D  +AQAAI+RSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

Q0DUR2 Transcription factor ILI64.2e-2060.61Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R  RSR+S   S+ I+D QI+DL+SKL  L+P+ R R     S+  V +S+VLQETCN+IRSL +EVDDLSERLSELLA++D  +AQAAI+RSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

Q8GW32 Transcription factor PRE62.6e-2265.98Show/hide
Query:  STRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        S R+ RSR+S   S+ ISD QI+DL+SKL  LIP++R RRS       VSASKVLQETCN+IR+L REVDDLS+RLSELLASTD  +A+AAI+RSLL
Subjt:  STRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

Q9CA64 Transcription factor PRE33.0e-1860.2Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        MS R  RSR+S   ++ IS+ QI DLI KL QL+P++R+ R S      VSA++VLQ+TCN+IR+L REVDDLSERLSELLA++D  TAQAA++RSLL
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

Q9LXG5 Transcription factor PRE22.1e-1959.78Show/hide
Query:  RSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        R  R    S+ ISD QI DLISKL Q IP+IR  R     S+TVSASKVLQETCN+IR+L +E DDLS+RL++LL S DP + QAA++RSL+
Subjt:  RSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.9e-2365.98Show/hide
Query:  STRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        S R+ RSR+S   S+ ISD QI+DL+SKL  LIP++R RRS       VSASKVLQETCN+IR+L REVDDLS+RLSELLASTD  +A+AAI+RSLL
Subjt:  STRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.1e-1960.2Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        MS R  RSR+S   ++ IS+ QI DLI KL QL+P++R+ R S      VSA++VLQ+TCN+IR+L REVDDLSERLSELLA++D  TAQAA++RSLL
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

AT3G47710.1 BANQUO 32.8e-1956.57Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R  RSR++   ++ I+D QI DL+ +LH+L+P++ N R S      VSAS+VLQETC++IR+L +EVDDLSERLS+LL STD  +AQAA++RSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

AT5G15160.1 BANQUO 21.5e-2059.78Show/hide
Query:  RSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        R  R    S+ ISD QI DLISKL Q IP+IR  R     S+TVSASKVLQETCN+IR+L +E DDLS+RL++LL S DP + QAA++RSL+
Subjt:  RSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.8e-1957.58Show/hide
Query:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS R  RSR+S   +  ISD+Q+ DL+SKL Q++P+I  RR S  +    SASKVLQETCN+IR+L REVD+LSERLS+LL S D ++ +AA++RSLLM
Subjt:  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCAGAACCCCCCGTTCTAGACGCTCCCCTCTTCCTTCTACCACCATCTCTGACCACCAGATTGCTGATTTAATCTCCAAATTACACCAACTCATCCCTCAGAT
TCGTAATCGACGTTCCTCCTCCTCCTCCTCCTCCACGGTATCAGCTTCCAAGGTTCTACAAGAGACTTGCAACTTCATAAGAAGCTTAGAAAGAGAGGTGGATGACTTGA
GCGAGCGACTATCAGAGCTATTGGCGTCCACAGACCCTGAAACTGCTCAGGCTGCCATACTTAGAAGCTTACTTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCAGAACCCCCCGTTCTAGACGCTCCCCTCTTCCTTCTACCACCATCTCTGACCACCAGATTGCTGATTTAATCTCCAAATTACACCAACTCATCCCTCAGAT
TCGTAATCGACGTTCCTCCTCCTCCTCCTCCTCCACGGTATCAGCTTCCAAGGTTCTACAAGAGACTTGCAACTTCATAAGAAGCTTAGAAAGAGAGGTGGATGACTTGA
GCGAGCGACTATCAGAGCTATTGGCGTCCACAGACCCTGAAACTGCTCAGGCTGCCATACTTAGAAGCTTACTTATGTAATGAGCATCACAACTCCATCCCAGGTTTCTT
CTTCTATACACAATTCGGTGTTCAGCAGCCAAGCCTCAGATGTGGATTTCCCTACACACACCTATTTCAAACCCTCCATCTTTACTCGCCATGCAATTAATTAATTAATA
TAAATAGATAAAGAAGTGCTTCTCTAGAGTTCTACTTTTAT
Protein sequenceShow/hide protein sequence
MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM