CuGenDBv2

Gene ID	Carg01732
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RRM domain-containing protein
Genome location	Carg_Chr04:9588864..9589780
RNA-Seq Expression	Carg01732
Synteny	Carg01732
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601405.1 hypothetical protein SDJN03_06638, partial [Cucurbita argyrosperma subsp. sororia]

8.9e-104

100

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Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_022957251.1 uncharacterized protein At1g27050 [Cucurbita moschata]

6.3e-102

97.94

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Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPSPHHS SFAKRRRHQPP SLP EDDDVDKPLPKPAPP+ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]

1.1e-101

98.45

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Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS HHS SFAKRRRHQPP SLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_023537967.1 uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]

1.7e-102

98.45

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Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPSPHHS SFAKRRRHQPP SLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLAST+VNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]

8.6e-91

90.21

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Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS H   S AKRRR  PP   P ED+D+DKPL KPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7STE1 Homeobox-leucine zipper protein ATHB-54

2.6e-85

87.63

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Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS H   S AKRRR  PP S    DDD++KP+ KPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A5D3CUC0 Thaumatin-like protein 1

2.6e-85

87.63

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Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS H   S AKRRR  PP S    DDD++KP+ KPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A6J1DBZ8 uncharacterized protein At1g27050

1.2e-85

85.05

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Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        M RKRDKPYPS H   S +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D PFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A6J1GYQ1 uncharacterized protein At1g27050

3.1e-102

97.94

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Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPSPHHS SFAKRRRHQPP SLP EDDDVDKPLPKPAPP+ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A6J1KFA1 uncharacterized protein At1g27050

5.2e-102

98.45

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Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS HHS SFAKRRRHQPP SLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

SwissProt top hits

e value

%identity

Alignment

P0CJ66 Uncharacterized protein At1g27050

5.9e-50

51.94

Show/hide

Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        M RKRDKPY + H  A  +KRRR   P S    D+ +DKP+ KP PP ALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N          SS  +    + R +V
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G27050.1 homeobox protein 54

4.2e-51

51.94

Show/hide

Query:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        M RKRDKPY + H  A  +KRRR   P S    D+ +DKP+ KP PP ALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A
Subjt:  MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N          SS  +    + R +V
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTGCGTCCTTCGCTAAGAGGCGGCGTCATCAGCCGCCGGAATCGTTGCCTGCGGAGGACGATGATGT
GGACAAGCCATTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCA
TCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACC
ATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTT
GCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAACAGTTCGTCAAGGTCCGATGAGCCTTTCAGGG
GCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

mRNA sequence

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Protein sequence

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MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFT
IDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

Carg01732 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome